Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_J04
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    33   0.004
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   2.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -2

Query: 281 TSSYSASRTPATTIPAFSQIKTSHRQWSHSKPASQPQQDHRSRLTALPGPTARNFTASSR 102
           TS+YS +R PAT++   +    + +Q    +   Q QQ  +S    L      N  ASS 
Sbjct: 773 TSNYSTTRWPATSV--ITTTTGARQQQQQQQQQQQQQQQQQSSSDYL---MVGNSPASSP 827

Query: 101 RYSSSQPTTGLST 63
           RY S+  T+  ST
Sbjct: 828 RYLSAAATSSTST 840


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 140 PGPTARNFTASSRRYSSSQPTTGLSTLGVTHLRRG 36
           P P  R  +A S   SSS P  G +  G    R G
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 109 HHAATVHRSPRPDYQR 62
           HH    HR  R DY+R
Sbjct: 156 HHGMAYHRGHRKDYER 171


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 109 HHAATVHRSPRPDYQRLGSHISGVA 35
           HH   VHR  +P+   L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -3

Query: 307 GAAHRHQRGLPHTAHQELRLPQSPHS 230
           G  H H    PH  H     P   HS
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHS 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,543
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)