Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_I02
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 274 1e-74
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 270 1e-73
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 97 3e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 8e-09
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 39 7e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.007
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.25
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.25
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.25
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.33
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 30 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 26 5.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 7.2
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 7.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 274 bits (671), Expect = 1e-74
Identities = 122/172 (70%), Positives = 140/172 (81%)
Frame = -1
Query: 677 FPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDAVPK 498
FPLVTY+P+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD +P+
Sbjct: 271 FPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPR 330
Query: 497 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 318
DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAE
Sbjct: 331 DVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAE 390
Query: 317 AWARLDHKFDLMYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMD 162
AW+RLDHKFDLMY+KRAFVHWYV EDLAALE+DYEEVG D
Sbjct: 391 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3
Query: 753 LRFDGAXNLDXTEFQTNLVPYPRIHFP 673
LRF G+ N+D EFQTNLVPYPRIHFP
Sbjct: 246 LRFAGSLNVDLNEFQTNLVPYPRIHFP 272
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 270 bits (663), Expect = 1e-73
Identities = 122/172 (70%), Positives = 138/172 (80%)
Frame = -1
Query: 677 FPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDAVPK 498
FPLVTYAP+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD +P+
Sbjct: 267 FPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPR 326
Query: 497 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 318
DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAE
Sbjct: 327 DVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAE 386
Query: 317 AWARLDHKFDLMYAKRAFVHWYVXXXXXXXXXXXXXEDLAALEKDYEEVGMD 162
AW+RLDHKFDLMY+KRAFVHWYV EDLAALE+DYEEVG D
Sbjct: 387 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Score = 52.8 bits (121), Expect = 5e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 753 LRFDGAXNLDXTEFQTNLVPYPRIHFP 673
LRF+G+ N+D EFQTNLVPYPRIHFP
Sbjct: 242 LRFEGSLNVDLAEFQTNLVPYPRIHFP 268
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.1 bits (231), Expect = 3e-21
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Frame = -1
Query: 677 FPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDAVPK 498
F +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG K
Sbjct: 265 FFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMK 324
Query: 497 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 318
+V+ I +++TK + FV+W P + PP DL + + + N+T+I E
Sbjct: 325 EVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQE 376
Query: 317 AWARLDHKFDLMYAKRAFVHWYV---XXXXXXXXXXXXXEDLAALEKDYEEVGMD 162
+ RL +F M+ ++AF+HWY DL + + Y+E G+D
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 33.1 bits (72), Expect = 0.047
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 750 RFDGAXNLDXTEFQTNLVPYPRIHF 676
RF G N D + N+VP+PR+HF
Sbjct: 241 RFPGELNSDLRKLAVNMVPFPRLHF 265
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 55.6 bits (128), Expect = 8e-09
Identities = 36/151 (23%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Frame = -1
Query: 692 TPVSTFPLVTYAPVXSA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCM 525
+P F L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 263 SPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILD 322
Query: 524 LYRGDAVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 345
+ +G+A P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377
Query: 344 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 252
L+N T+IA + R ++D + + AF+ Y
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQY 408
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 753 LRFDGAXNLDXTEFQTNLVPYPRIHF 676
LR+ G N D +L+P PR HF
Sbjct: 243 LRYPGYMNNDLVSIIASLIPSPRCHF 268
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 39.1 bits (87), Expect = 7e-04
Identities = 53/201 (26%), Positives = 76/201 (37%), Gaps = 16/201 (7%)
Frame = -2
Query: 682 PLSHWSRTRQSXLPRRPTM------NSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCC 521
PL H + S + + PT N P P H+ PP N +PV L
Sbjct: 104 PLPHDVASHPSYMVQSPTSYHACSNNQSPFP----HSHHPPLH--NPLPVSCQPVLRPPP 157
Query: 520 TVVTP---YPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPR 365
P YP P+LP SKP V+ N V P +R + P+ ++P
Sbjct: 158 VPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPP 216
Query: 364 FNVPXACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESXP--KPVRTWLPS 191
P CP+ PP L A+ SS S ++ + T + + P + WLP
Sbjct: 217 PLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPM 276
Query: 190 KRITKKSAWTPLKARVREPKS 128
+ T + P A V +P S
Sbjct: 277 TQPT----FQPPSANVYQPAS 293
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 514 VTPYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVS-TTSHPPW 389
V P P + PS +V N + V P + SVS S+ PW
Sbjct: 54 VPPQPPSSSSPSTTGTVAVPINGANAVYPSTNSVSLPQSYDPW 96
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.9 bits (79), Expect = 0.007
Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 4/174 (2%)
Frame = -2
Query: 625 NSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTPYPRM*TRPSLPSKPSVLSNS 446
NS PLP + T ++ +IP ++ V TV + P P+ S S
Sbjct: 274 NSSPLPTTSTSCTTS-----TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Query: 445 STGVQPVSRSVST-TSHPPWCPEATWPRFNVPX---ACCPTPPPSLKLGLALTTSSTSCT 278
S+ + S S +T TS PP T VP + TPPP T+SS +
Sbjct: 329 SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLS 388
Query: 277 PSVLSCTGTSVRVWRRESXPKPVRTWLPSKRITKKSAWTPLKARVREPKSTKPV 116
S SCT TS + + PV +P + T P ++ PV
Sbjct: 389 TST-SCT-TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 30.3 bits (65), Expect = 0.33
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Frame = -2
Query: 625 NSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTPYPRM*TRPSLPSKPSVLSNS 446
+S PLP + T ++ + P S+ L+ T P P + S+P P+ S++
Sbjct: 104 SSSPLPSTSTSCTTSTS----IPPTGGSSSLSTPITPTVP-PTSTSSTSIPIPPTSTSST 158
Query: 445 STGVQPV---SRSVST-TSHPPWCPEA--------TWPRFNVPXACCPTPPPSLKL---- 314
T P+ S S +T TS PP + T P + P PP S
Sbjct: 159 DTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN 218
Query: 313 GLALTTSSTSCTPSVLSCTGTS 248
L T+STSCT S TG S
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGS 240
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 463 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPXACCPTPPPSLKLGL-ALTTSST 287
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 286 SCTPSVLS 263
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 463 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPXACCPTPPPSLKLGL-ALTTSST 287
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 286 SCTPSVLS 263
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 30.7 bits (66), Expect = 0.25
Identities = 36/139 (25%), Positives = 55/139 (39%)
Frame = -2
Query: 634 PTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTPYPRM*TRPSLPSKPSVL 455
PT S P PR T S+ R PV+ + A + + P+ SKP+ +
Sbjct: 964 PTSKSKPFPRLATGGSTAAAR--GPRPVVQNKPAAT---------KPVSMPAAKSKPAPM 1012
Query: 454 SNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPXACCPTPPPSLKLGLALTTSSTSCTP 275
+N PVS + T + PP A R N A P + + A T S++ P
Sbjct: 1013 AN------PVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064
Query: 274 SVLSCTGTSVRVWRRESXP 218
S ++ +S + S P
Sbjct: 1065 STVTSAASSPSNISKPSAP 1083
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 517 VVTPYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 383
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -2
Query: 646 LPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMA---STWLAVCCTVVTPYPRM*TRPSL 476
+P P++ P+ S P R A+PV+ S VV P + RP++
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQR--PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655
Query: 475 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 383
P P S PV V + PP P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -2
Query: 331 PPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESXPKPVRTWLPS--KRITKKSAWTP 158
P + G+ TS TS T S S++ S P P W P+ S+ TP
Sbjct: 142 PKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTP 201
Query: 157 LKARVREPKSTK 122
+ V EP+ TK
Sbjct: 202 VYVVVDEPRFTK 213
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.4
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Frame = -2
Query: 643 PRRPTMNSFPLP-RSQTHASSPPTRW*NAI---PVMASTWLAVCCTVVTPYPRM*TRPSL 476
PR S PLP + ++ PP R + P S+ AV P P + R S
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP-PAIPGR-SA 400
Query: 475 PSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPXACCPTPPPSLKLGLALT 299
P+ P + + S T PV S S PP P + P + P PPS + L
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 298 TSSTSCTP 275
+ P
Sbjct: 461 AGMPAAPP 468
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 3.1
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = -2
Query: 667 SRTRQSXLPRRPTMNSFPLP---RSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTPYPR 497
S T + L ++P+ NS P P S TH S T +S+ +V V+ P P
Sbjct: 177 SVTPSASLYKQPSFNSNPAPITTSSATHTSQFSTS-------SSSSVNSVHTPVMVPNPY 229
Query: 496 M*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWP 368
S+ + S S+ + V SVS+ S PP P + P
Sbjct: 230 FQYNSSMTAPSSSSSSVAPFVPRRQFSVSSASDPPQTPISMSP 272
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 605 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDAVPKDVNAAI 480
+ ACFEP N C H K C L KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 477 SDGRVHILGYGVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGNGK 620
S G +LGY ++ A++V+A + + HL+ G D K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 667 TSGKVDTGVRHQVSLELGXVQIXSAVESQKAVI 765
+ GKVD+G++ ++S G V+ A+ AV+
Sbjct: 149 SEGKVDSGIKTEISFVSGSVEASCALGIADAVV 181
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 481 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 395
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 353 RHVEPWPSRLRAPRWV 400
R+ + WPS++ P+WV
Sbjct: 154 RYSDSWPSKITLPKWV 169
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 314 KLQRWRWCWTACXRHVEPWPSRLRAPRWV 400
K Q RWC AC + L RWV
Sbjct: 738 KRQNLRWCMLACSMYARDPQGALTPLRWV 766
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = -2
Query: 682 PLSHWSRTRQSXLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTPY 503
PLS QS P N F + R+ SSP + + M S + + P
Sbjct: 352 PLSSGVTPNQSFFPDVSGNNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPV 411
Query: 502 PRM*TRPSLPSKPSVL-SNSSTGVQPVSRSVST 407
P + P +P+ +NSS V S V +
Sbjct: 412 PN--SNSQFPRRPNTFRTNSSKSVGQGSSGVDS 442
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 484 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 389
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,157
Number of Sequences: 5004
Number of extensions: 69555
Number of successful extensions: 248
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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