Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_H22
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 62 1e-10
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 51 2e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 49 9e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 46 9e-06
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 42 8e-05
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 37 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.007
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.038
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.050
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.066
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.087
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.15
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.26
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.46
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.46
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.81
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 1.1
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 1.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.5
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 3.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.3
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.7
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.7
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 7.5
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 26 7.5
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 61.7 bits (143), Expect = 1e-10
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = -1
Query: 661 KTKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAE-HAAE 485
K K + +L++ + D + + ++R HF QYG ++ + RA+CAFV + +R++AE AA
Sbjct: 207 KDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAAAA 266
Query: 484 KTFNRLVIFGKRLTIKWGKSQGRQG 410
+VI G RL ++WGK + G
Sbjct: 267 SPDGNVVIEGFRLKVQWGKPRSLGG 291
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 467
+T++VG L V+E+EL+ F +GEI + + P C FVQ+ +R +AE A +
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ-LQGY 361
Query: 466 VIFGKRLTIKWGKSQ 422
+ R+ + WG++Q
Sbjct: 362 PLGNSRIRLSWGRNQ 376
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 658 TKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTS-RNAAEHAAEK 482
T+ V T+YVGNLP N DE+ + G I ++P CAF+ + +A +
Sbjct: 111 TQPVKTVYVGNLPPNTPIDEILS-CVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDA 169
Query: 481 TFNRLVIFGKRLTIKWGKS 425
RL I G + + WGK+
Sbjct: 170 ALKRLTIRGTEVKVGWGKN 188
Score = 43.2 bits (97), Expect = 5e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 482
+Y+GN D++T + L+ F ++GEI + CAFV +TS +A +A ++
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDR 468
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 482
+++GNLP+ +TEDE+R +G I + +V AFV + + AA A ++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQE 260
Score = 30.7 bits (66), Expect = 0.26
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKT-FNRL 467
T+Y+GN+ + T +E+ + + G + + + FV + +A E + + L
Sbjct: 324 TVYIGNIHADTTIEEIC-NAVRGGLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGL 382
Query: 466 VIFGKRLTIKWGKSQG 419
VI +RL I WGK G
Sbjct: 383 VIRNRRLKIGWGKHSG 398
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 45.6 bits (103), Expect = 9e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 467
TT++VG L N++E +L+ F +G I + + C FVQY+ ++AAE A T
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAI-NTMQGA 355
Query: 466 VIFGKRLTIKWG 431
++ + + WG
Sbjct: 356 LVGTSHIRLAWG 367
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 529 FVQYTSRNAAEHAAEKTFNRLVIFGKRLTIK--WGKSQGRQ 413
FVQ++S AAE A K +N +I G T K W G Q
Sbjct: 132 FVQFSSSAAAERALMK-YNNTMIPGAHCTFKLNWATGGGIQ 171
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 42.3 bits (95), Expect = 8e-05
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 467
T +YV LP+N+T ELR +F +GEI L + + R AE A + N
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEI--LYTQVNNNSGRIVFAQRYFAEQAINE-MNNF 232
Query: 466 VIFGKRLTIKWGK 428
+ G R+ + W +
Sbjct: 233 PLHGVRIQLSWAR 245
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLVI 461
L+VGNLP V+ + F YG + + ++ AF+ + S A+H E+ + +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRIF 648
Query: 460 FG 455
FG
Sbjct: 649 FG 650
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV------PRAQCAFVQYTSRNAAEHAAE 485
T +Y+ NL +TE E F Q+GEI L+LV PR FV Y + A+ A +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG-FGFVNYANHECAQKAVD 319
Query: 484 KTFNRLVIFGKRLTIKWGKSQGRQGLTEK 398
+ N GK+L + G++Q + E+
Sbjct: 320 E-LNDKEYKGKKLYV--GRAQKKHEREEE 345
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = -1
Query: 652 TVTTLYVGNLPDNVTEDELRGHFYQYGEIR----CLTLVPRAQC--AFVQYTSRNAAEHA 491
T +LYVG L +VTE L F G + C V R A+V + + E A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 490 AEKTFNRLVIFGKRLTIKWGK 428
++ N +I G+ I W +
Sbjct: 138 LDE-LNYTLIKGRPCRIMWSQ 157
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -1
Query: 643 TLYVGNL-PDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRL 467
TLYVG + P + E+ + HF ++G+I + ++ AF+ Y + A+ A E ++
Sbjct: 175 TLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQS 234
Query: 466 VIFGKRLTIKWGKSQGRQGLTEKN 395
+ + L ++W + +N
Sbjct: 235 LDHDECLNVRWATTDPNPASQARN 258
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAEKT 479
LYVG LP E ++R +F Q+G + L + + AF+++ S + A AE T
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAE-T 165
Query: 478 FNRLVIFGKRLTIK 437
+ +++GK L K
Sbjct: 166 MHNYLLYGKLLQCK 179
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV-------PRAQCAFVQYTSRNAAEHAAEK 482
++VG +P + TE+E R F Q+G + TL+ PR FV Y + +A E +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRG-FGFVTYENESAVEATMSQ 307
Query: 481 TFNRLVIFGKRLTIK 437
+ + I GK + +K
Sbjct: 308 PY--ITIHGKPVEVK 320
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
+++G L T+D LR +F Q+GE+ T++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 33.5 bits (73), Expect = 0.038
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEKTFNRLV 464
LYV NLP + + F YG ++ + ++ A V Y S ++A A + NR V
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNRPV 60
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.1 bits (72), Expect = 0.050
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCL 557
+T+YVGN+ ++++E+ HF +YG++ +
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.066
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -1
Query: 658 TKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQY 518
T +++GNLP + E E+ F ++G+I + ++ + AFV +
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF 341
Score = 32.3 bits (70), Expect = 0.087
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHA 491
+Y ++ D++T +EL QYGEI + + FV YT+ + A A
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAA----EHAAEKTF 476
T+++GNL E+ ++G ++ +P FV + + +AA ++ AE+
Sbjct: 410 TVFLGNLHTKTKGHEICD-LIRHGGLQDFHYIPEKHICFVTFITYSAANAFHDYLAEE-- 466
Query: 475 NRLVIFGKRLTIKWGKSQG 419
+++ G+R+ + WGK G
Sbjct: 467 -EVLLHGRRIKVGWGKESG 484
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.087
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 661 KTKTVTTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
K + + L+VGNL T+ +L+ HF Q G+IR + L+
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
++YVGN+ +VT +EL+ HF G + +T++
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTIL 87
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC-----AFVQYTSRNAAEHAAE 485
T++VGNL +VTE L F +GEI + L + + AFV++ A+ A E
Sbjct: 7 TVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAME 64
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTL 551
T++VGNL N TED+L F G+I+ + L
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.9 bits (64), Expect = 0.46
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTL 551
T ++V N+ VT ++LR HF +GE+ L L
Sbjct: 94 TQVFVSNISPLVTSEQLRYHFKSFGEVFDLDL 125
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.81
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHF-YQYGEIR-CLTLVPRAQCAFVQY 518
T+YVGNLP + +E+EL+ F Q G R C FV++
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEF 470
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 643 TLYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
T++V NL TE EL HF Q+G + LV
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLV 309
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQC------AFVQYTSRNAAEHAAE 485
+TL+V NL +D+L F G I+ +V + FV ++ A+ AA+
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 484 KTFNRLVIFGKRLTIKWGKSQGRQGL-TEKNDGV 386
+ N+ + G+ L + + + R + T++N V
Sbjct: 65 ELKNK-KLHGRILRLDFATPRKRSEVDTDQNKAV 97
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
++VGN+P +V+E ++ F Q G ++ LV
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ-----CAFVQYTSRNAAEHAAEKTF 476
L V N+ N+T+++++ F +G+I + L Q ++QY + +A +A EK
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK-M 400
Query: 475 NRLVIFGKRLTIKWGKSQ 422
N + G+ + + G +
Sbjct: 401 NGFDLAGRNMRVCLGNDK 418
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEI 566
T L+VG +P T +++ F YG+I
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 655 KTVTTLYVGNLPDNVTEDELRGHFYQYGEIR 563
K +YVGNL TE+++ F + GEIR
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIR 59
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
+YVGN+P + E+++ F Q G ++ LV
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLV 37
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -2
Query: 438 NGVNRKDDKDLLRRMMVYPCWNQYL------DCLGRCHHPLHIYIHSRHKCHHPRT 289
N + R D ++ R+ M YP +N ++ DC RC H H + CH T
Sbjct: 320 NSLFRILDMEIERQPMPYP-YNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQCAFVQYTSRNAAEHAAEK 482
L V N P + +EL F +GE+ + + P A +++ + A K
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSK 560
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEI 566
L+VGNLP + + + L+ HF + G++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQV 118
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 7.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = -1
Query: 646 TTLYVGNLPDNVTEDELRGHFYQYGEIRCLTLVPRAQ------CAFVQYTSRNAAEHAAE 485
T + V N+P ++ +D L HF Q G R AF + A+
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQ-VVV 260
Query: 484 KTFNRLVIFGKRLTIKW 434
+T N I G+RL ++W
Sbjct: 261 QTLNGYEINGRRLRVEW 277
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 640 LYVGNLPDNVTEDELRGHFYQYGEIRCLTLV 548
+Y+GNL ++ ED++ F ++GE + LV
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLV 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,736
Number of Sequences: 5004
Number of extensions: 52425
Number of successful extensions: 185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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