Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_H16
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 171 1e-43
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 168 1e-42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.7
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.5
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 171 bits (416), Expect = 1e-43
Identities = 82/135 (60%), Positives = 97/135 (71%)
Frame = -1
Query: 692 GXTXIAGRFTPXAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 513
G T IAGRFTP FTN I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 97 GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSIL 156
Query: 512 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 333
VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E
Sbjct: 157 NHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREE 216
Query: 332 QQAKEQAVVPAKREV 288
+ K A + +V
Sbjct: 217 EAKKAAAAAAEEAQV 231
Score = 29.1 bits (62), Expect = 0.80
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 826 LGXYXGKXFXGXXXXXTHRDPXDXFVISSRPFGQRAVXKFCXAH 695
LG K T +P D V+S+R +G RAV KF AH
Sbjct: 53 LGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFA-AH 95
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 168 bits (408), Expect = 1e-42
Identities = 83/134 (61%), Positives = 97/134 (72%)
Frame = -1
Query: 692 GXTXIAGRFTPXAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 513
G T IAGRFTP FTN I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 98 GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSIL 157
Query: 512 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 333
VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E
Sbjct: 158 NHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREE 217
Query: 332 QQAKEQAVVPAKRE 291
+Q K A A+ E
Sbjct: 218 EQ-KAAAAAAAEEE 230
Score = 33.9 bits (74), Expect = 0.028
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = -2
Query: 826 LGXYXGKXFXGXXXXXTHRDPXDXFVISSRPFGQRAVXKFCXAH 695
LG K T +P D VISSRP+G RAV KF AH
Sbjct: 54 LGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFA-AH 96
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 441
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 440 AR 435
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,955
Number of Sequences: 5004
Number of extensions: 56216
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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