Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_H07
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   168   9e-43
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   167   2e-42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   7.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  168 bits (408), Expect = 9e-43
 Identities = 83/141 (58%), Positives = 96/141 (68%)
 Frame = -3

Query: 788 RAXXAIXXPXNVLLF*SRPFGQRXVXXFPAHTGVTXIAERFTPGAFXNQIQAAFREPRLL 609
           R    I  P +V +  SRP+G R V  F AHTG T IA RFTPG F N I   +REPRL+
Sbjct: 66  RVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 125

Query: 608 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 429
           IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREV
Sbjct: 126 IVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREV 185

Query: 428 LRLRGVLPRDQRWDVVVDLFF 366
           LRLRG + R   W+V+ DL+F
Sbjct: 186 LRLRGNISRTTAWEVMPDLYF 206


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  167 bits (405), Expect = 2e-42
 Identities = 82/141 (58%), Positives = 96/141 (68%)
 Frame = -3

Query: 788 RAXXAIXXPXNVLLF*SRPFGQRXVXXFPAHTGVTXIAERFTPGAFXNQIQAAFREPRLL 609
           R    I  P +V +  +R +G R V  F AHTG T IA RFTPG F N I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 608 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 429
           +V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 428 LRLRGVLPRDQRWDVVVDLFF 366
           LR+RG L R   WDV+ DL+F
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYF 205


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 441
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 440 AR 435
           +R
Sbjct: 240 SR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 418 VVCFPVTSAGMLWLICSSXRDPEESEKD 335
           V+ FP TS+G   LI S    PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,251
Number of Sequences: 5004
Number of extensions: 51675
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)