Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_H01
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    29   0.75 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    28   1.7  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    27   2.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   3.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   5.3  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   7.0  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 118  HVGGGRAHVQGEARRDAFGVKCVEQTYAISQSDDLDNVITG*SQQISPGKVR 273
            +V G + HV   A  +   +K   +  A+S++DD+DNV++G S      K R
Sbjct: 1102 NVIGTQPHVNVSAVPNTGNLKDALEGSAVSKTDDVDNVVSGHSNVNGVSKSR 1153


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 YRVRRGEMRLA*SALNRRMPSASPTIWIMSSRDSLSRS 256
           Y  R    R   S ++R  PS+S T++ M+SRDS+  S
Sbjct: 37  YNQRENSSRSGSSTISRE-PSSSGTMYPMASRDSMKES 73


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 415 VAGWAAHLHLTSILTIQRLHLISSTNDGWLRNRLGSDRARGRFRCHKRTA 564
           + G +A +  T+   I+R+ L+    D  +R    S R +G   C KRTA
Sbjct: 33  MGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTA 82


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 403 SSWGVAGWAAHLHLTSILTIQRLHLISSTNDG----WLRNRLGSDRA 531
           S+  V GW++ L+L+S+ +  +    S + DG    W+   LG D+A
Sbjct: 543 SAVDVMGWSSTLNLSSLSSFDQEVFQSISKDGLLQTWMARVLGDDKA 589


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 369 PDKNFGLSKDATSAETQVWLSRQRFMQHAATFANFSGADLLRLSRDDIIQIVGL 208
           P + F   KD+ +A+++ W    R+      F  ++G+   RL  DD  + V +
Sbjct: 212 PYREFSNEKDSAAAQSKTWALLGRY---TGGFVQYTGSRNARLVYDDFYRNVSV 262


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/77 (24%), Positives = 27/77 (35%)
 Frame = -2

Query: 279 TFANFSGADLLRLSRDDIIQIVGLADGIRLFNALHAKRISPRLTLYVCPPSSDVHCALYL 100
           +F++ S   + RLS   +    G          LH  R    +T YV PP        YL
Sbjct: 430 SFSDLSSLTITRLSIGMVFYTHGWTKSSLSTGLLHHHRFGDTVTWYVLPPDESDAFERYL 489

Query: 99  HACRAHELVHKLNALQG 49
            +      +  LN   G
Sbjct: 490 ISSYPQYTMEDLNRSNG 506


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = -2

Query: 549 TPKSASSPIATKPISQPAIVGTTNQMKPLYCQ----DAGEMKVSSPTCHSPGAILPD 391
           +P    +P   KPIS P+ +  T  +    CQ    D G  + S      P   +PD
Sbjct: 755 SPPHNDAPPKAKPISAPSELPNTTSVAEAKCQTVTDDEGTDQQSDEKSTEPKTFIPD 811



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 483 TNQMKPLYC-QDAGEMKVSSPTCHSPGAILPDLPQPAEEPDKN 358
           TN++  LY  ++  E  V+S +  S G +    P P  +P+K+
Sbjct: 415 TNKIDKLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKS 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,115
Number of Sequences: 5004
Number of extensions: 51262
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)