Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G24
         (1032 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   3.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.5  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect(2) = 0.55
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 156 PXPPPPPPXXXF 191
           P PPPPPP   F
Sbjct: 307 PPPPPPPPSNDF 318



 Score = 23.8 bits (49), Expect(2) = 0.55
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 105 KXXXPKKXXKQXXXTPXPXPPPPP 176
           K   P          P P PPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
 Frame = +1

Query: 826  PXGGPQXGPFXPHXPPXGKKXXGXQPPLXPXGXFXPPXRKXXXXXPXXXXXPPP----XX 993
            P G        P  PP  +       PL P G   PP        P     PPP      
Sbjct: 326  PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP-PPPRSAPSTGRQPPPLSSSRA 384

Query: 994  XENPPXPLXPP 1026
              NPP P  PP
Sbjct: 385  VSNPPAP--PP 393



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/64 (25%), Positives = 17/64 (26%)
 Frame = +1

Query: 826  PXGGPQXGPFXPHXPPXGKKXXGXQPPLXPXGXFXPPXRKXXXXXPXXXXXPPPXXXENP 1005
            P   P   P  P   P G       PP  P     P         P     PPP     P
Sbjct: 425  PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484

Query: 1006 PXPL 1017
              P+
Sbjct: 485  AAPV 488


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 156 PXPPPPPP 179
           P PPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 23.4 bits (48), Expect(2) = 5.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 156 PXPPPPPP 179
           P PPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 162 PPPPPPXXXFLXGP 203
           PPPPPP      GP
Sbjct: 762 PPPPPPPGVAGAGP 775



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 162 PPPPPPXXXFLXGPS 206
           PPPPPP      G S
Sbjct: 776 PPPPPPPPAVSAGGS 790


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 731 FLXXPXVFXXGPGFFXXPRGXXGGXPPXFXXXPXG 835
           F   P  F  GPG F    G  GG P  F   P G
Sbjct: 233 FEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 117 PKKXXKQXXXTPXPXPPPPP 176
           P    KQ    P P PPPPP
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 150 PXPXPPPPPP 179
           P P PPPPPP
Sbjct: 234 PLPAPPPPPP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,475
Number of Sequences: 5004
Number of extensions: 27920
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)