Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G19
         (778 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB71DB Cluster: PREDICTED: similar to jumonji do...    38   0.37 
UniRef50_UPI00015B59D1 Cluster: PREDICTED: similar to GAGA facto...    33   8.0  

>UniRef50_UPI0000DB71DB Cluster: PREDICTED: similar to jumonji
           domain containing 1B; n=1; Apis mellifera|Rep:
           PREDICTED: similar to jumonji domain containing 1B -
           Apis mellifera
          Length = 1874

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -2

Query: 399 AASKLVSRHFEESLRLANQKRG-ERNNLTWSIMHSLTP--NRAAPAP 268
           AA + V +HFEESLRLA QKR  +  ++ W+    L P  +R   AP
Sbjct: 11  AAEQAVHKHFEESLRLAQQKRNMQSTSMAWNSFLPLPPPGSRTHAAP 57


>UniRef50_UPI00015B59D1 Cluster: PREDICTED: similar to GAGA factor
           class A-; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to GAGA factor class A- - Nasonia vitripennis
          Length = 225

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 182 NIHPHGHPFHPQETTAPHMLVLYLPRLKIRIRHIQAYPKESQISHLIIILHTEPT 18
           N H HGHP HP      H +    P   +   +   Y  +S +S L   L T PT
Sbjct: 132 NDHGHGHPSHPTNNNPAHSMSA-CPPSSMTPHNNSIYSSDSMLSSLFPTLPTLPT 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,898,737
Number of Sequences: 1657284
Number of extensions: 10162515
Number of successful extensions: 29169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29152
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)