Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G07
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 236 IRIIHNPHEHPH 201
           I+I H PH HPH
Sbjct: 457 IQIGHTPHHHPH 468


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 619 MTCRHWKPNPXVTTTSSG 672
           +TC +  PNP   TT++G
Sbjct: 425 VTCTNCGPNPCTHTTTNG 442


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 619 MTCRHWKPNPXVTTTSSG 672
           +TC +  PNP   TT++G
Sbjct: 411 VTCTNCGPNPCTHTTTNG 428


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 619 MTCRHWKPNPXVTTTSSG 672
           +TC +  PNP   TT++G
Sbjct: 445 VTCTNCGPNPCTHTTTNG 462


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 619 MTCRHWKPNPXVTTTSSG 672
           +TC +  PNP   TT++G
Sbjct: 394 VTCTNCGPNPCTHTTTNG 411


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 121  RRTPSVCWRHPPGSTWTG 68
            + T  V W+ PP   W G
Sbjct: 990  QHTLKVTWKPPPREDWNG 1007


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,042
Number of Sequences: 438
Number of extensions: 1862
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)