Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G03
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 403 TRQAGSGPAGYSGTPAAPSGRPDGLPY 323
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 406  PTRQAGSGPAGYSG 365
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 453 RCRGVIRATGRRCIASRPGRLVLVQ 379
           +CR   R TG   +++  GRLV+ +
Sbjct: 180 QCRTKHRLTGETRLSATKGRLVITE 204


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 403 TRQAGSGPAGYSGTPAAPSGRPDGLPY 323
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 401 PAGWFWSSGVFRDTSGTV 348
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 329 QPVGPPRRCRWCP 367
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 341 PPRRCRWCPGIPRWTRTSLPGRDAIHRRPVALITPR 448
           PPR     PG PR   T L      ++RP     PR
Sbjct: 138 PPRE----PGTPRINFTKLKRHHPRYKRPRTTFEPR 169


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
 Frame = +2

Query: 368  GIPRWTRTSLPGRDAIHRRPVALITPRQ-RARVLVAR--RTXXXXXXXXXXXXGGEAATY 538
            GIPR  R     R+   +       P   R++ L+ +  R               E  +Y
Sbjct: 1295 GIPRDQRAMTEARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSSEDESY 1354

Query: 539  RGPGRTGAFPPP 574
            RGP  +G  P P
Sbjct: 1355 RGPSASGGRPVP 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,453
Number of Sequences: 438
Number of extensions: 4251
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)