Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G02
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   113   3e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   112   5e-26
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  113 bits (272), Expect = 3e-26
 Identities = 65/141 (46%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
 Frame = -3

Query: 707 LTRAFRNIPRCGAPEC*PS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 528
           + +AFRNIP             L+LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 217 IVKAFRNIPGVEIVNV-RRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275

Query: 527 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAA 354
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA 
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAK 335

Query: 353 VLKRKAILELRRRKNLKALAD 291
               KA ++L   K  KA  +
Sbjct: 336 AY--KANVKLNTGKTPKAAGE 354



 Score = 33.1 bits (72), Expect = 0.047
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 780 KGKMRTLXCIQRKGPXIXFNKDSG 709
           KGK+R    +QR+GP + FN+D+G
Sbjct: 193 KGKLRNRRHVQRRGPLVVFNEDAG 216


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (270), Expect = 5e-26
 Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
 Frame = -3

Query: 707 LTRAFRNIPRCGAPEC*PS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 528
           + +AFRNIP             L+LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KK
Sbjct: 217 IVKAFRNIPGVEIVNV-RRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275

Query: 527 NFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAA 354
           N+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA 
Sbjct: 276 NYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAK 335

Query: 353 VLKRKAILELRRRKNLKALAD 291
               KA +++   K  KA  +
Sbjct: 336 AY--KANVKINSEKTPKAAGE 354



 Score = 33.1 bits (72), Expect = 0.047
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 780 KGKMRTLXCIQRKGPXIXFNKDSG 709
           KGK+R    +QR+GP + FN+D+G
Sbjct: 193 KGKLRNRRHVQRRGPLVVFNEDTG 216


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +3

Query: 357 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 518
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -3

Query: 473 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 300
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 299 LADAEKSGLKLXKRNPAMKAEKLRERRRKN 210
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 539 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 363
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 616 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 482
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 610 VSSSGLSPHSAGLTPYSGHGRHHRNK 533
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 234 FLSLHSGVSLXQL*STLLGISQSLQVLPSAQL 329
           F+SL  G +L  + ++ L ++QSL  +P  +L
Sbjct: 360 FISLEGGYNLDSISTSALAVAQSLLGIPPGRL 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,267
Number of Sequences: 5004
Number of extensions: 44956
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)