Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_G01
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 444  KPKKXGPPXXXXPPPPPPP 500
            +P+   PP    P PPPPP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPP 1711


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 464 PXXXXPPPPPPPXKKXXGG 520
           P    PPPPPPP     GG
Sbjct: 942 PAFPPPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 480 PPPPPPPXKKXXGGGG 527
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 447 PKKXGPPXXXXPPPPPPPXKKXXGG 521
           P   G      PPPPPPP     GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 479 PPPPPPPXKKXXGGG 523
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 462 PPXXXXPPPPPPPXKKXXGGGGXXP 536
           PP      PPPPP      G G  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 24.6 bits (51), Expect(2) = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 483 PPPPPPXKKXXGGGGXXP 536
           PPPPPP     G G   P
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 21.0 bits (42), Expect(2) = 1.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 480 PPPPPP 497
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 480 PPPPPPPXKKXXG 518
           PPPPPPP ++  G
Sbjct: 311 PPPPPPPSRRNRG 323



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 447 PKKXGPPXXXXPPPPPPPXKKXXG 518
           P   G      PPPPPPP     G
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAG 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,386
Number of Sequences: 5004
Number of extensions: 29262
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)