Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_F24
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   1.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.8  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 318 LTTRKLAERLGVQQPALYWHFRNKR 244
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 607 LESGGWIGPGVFYGGQNSVDGV 672
           L  GGW+ P ++Y G++SV  V
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINV 124


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +1

Query: 214 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACR--QTVYADLVQQVQGGTDHCIRLQLC 387
           H F Q   +   +P++P    ++NP P R+ +    ++V         G     I L   
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRRSSTMNYKSVSTTTSPSKYGYVSGRIALSPI 355

Query: 388 HA*HFITDKHNMCTNLSVIKNPRQHNGYHTVLEEFRTG 501
           H    + D  N C NL V   PR  N    + E +  G
Sbjct: 356 HLRGALRDVTNKC-NLKV---PRNRNSLSNLDEYYVNG 389


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 611 SPEAGSVPVSSMEVKTAWMASPGDLTVX*TSSXYIXLPRYTP 736
           S    S+P +S EVKTA  +S  ++    TSS       YTP
Sbjct: 709 SSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTP 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,723
Number of Sequences: 5004
Number of extensions: 57657
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)