Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_F24
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   3.0  
02_05_0040 + 25341418-25341810                                         29   5.3  
12_02_0954 - 24757417-24758214                                         29   7.0  
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541...    29   7.0  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   7.0  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    28   9.2  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 169 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 348
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 349 QGG 357
             G
Sbjct: 311 HPG 313


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 212
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 58  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 189
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>10_02_0113 +
           5410413-5410471,5411330-5413309,5413535-5413594,
           5416037-5418047
          Length = 1369

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = -3

Query: 549 YLGDTIEQVCTKKQAGTGPEFLEHCVISIVLARILYH**VGAHIMFISDKVSSMTKLQPN 370
           YLG         K   TG EF+ H  I +V+  I +   + ++++F+  K+ S   ++  
Sbjct: 643 YLGPNCGAQFHAKHLSTGGEFVTHVRILLVVLGIPF---LSSNLVFLMLKLLSSCLIRLR 699

Query: 369 TVIRAALDLLNE 334
           + +  AL L NE
Sbjct: 700 SSLARALQLWNE 711


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 598 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 500
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 535 YRTSLYKKAGWYRSGIPRALCDIHCAGADSL 443
           Y+TSL  + G ++ G+PR  C    AG D L
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKL 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,013,331
Number of Sequences: 37544
Number of extensions: 465610
Number of successful extensions: 1188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)