Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_F23
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0941 + 26179682-26182327 31 1.5
03_02_0539 - 9329572-9330729,9330988-9331041 29 3.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.6
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 4.6
01_01_0846 - 6606054-6606239 29 4.6
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 6.1
01_01_1120 - 8884760-8885017,8886088-8886150,8887365-8887627,888... 29 6.1
01_01_1015 + 8029884-8030676,8030755-8030771 29 6.1
12_02_0414 + 18824347-18825161,18826018-18828229 28 8.1
02_05_0409 - 28723534-28724646 28 8.1
02_03_0068 + 14711891-14712418 28 8.1
>06_03_0941 + 26179682-26182327
Length = 881
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 45 YEVPAHTGRAGYVRLNDLQVLRADRG-PKDFRTHPLNDSPATLTPDEVGG 191
Y P + + Y+ + +L+ +RG P F +D+P +T D VGG
Sbjct: 377 YPNPPNPDKVLYINKKEAPLLKVERGVPVTFSVEAGHDAPLYITSDAVGG 426
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 111 ADRGPKDFRTHPLNDSPATLTPDEVGGLPRSTLQPD-GAAHPKDAQPTEPSRR 266
A+ G D + P+ + A P E+GGLP S+ AA + A+P + R
Sbjct: 26 ANVGGGDAQHLPVGPTAAAAAPGEIGGLPTSSSSASAAAAAAQQARPNSMAER 78
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 539 RAFAPTPXPVDGGFPPVKXKGRPEG 465
R +AP P P GGFPP P G
Sbjct: 5 RPYAPHPPPPQGGFPPQPPPMNPYG 29
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 90 NDLQVLRADRGPKDFRTHPLNDSPATLTPDEVGGLPRSTLQPDGAAHPKDAQPTEP 257
N ++LR D G + + L + + D +PR L P+ A P+D T P
Sbjct: 1955 NICRLLRFDDGREMYAKFKLRPADPDVPEDSGKVVPRGILPPETGAIPRDEDDTRP 2010
>01_01_0846 - 6606054-6606239
Length = 61
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 241 ASLG*AAPSGCSVDRGSPPTSSGVRVAG 158
A+LG P CSV +GS SSGV V G
Sbjct: 2 AALGWEEPRRCSVGKGSGGRSSGVAVLG 29
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 217 SGCSVDRGSPPTSSGVRVAGESFSGWVL---KSLGPRSALNTCRSLSLTYPARPVCAGT 50
SG SV RG+P G VAG S L SL + LNT S +P + AG+
Sbjct: 67 SGVSVGRGTPNLGVGTAVAGRSCPSSTLFPGSSLSSTALLNTMHEGS--FPQTALVAGS 123
>01_01_1120 -
8884760-8885017,8886088-8886150,8887365-8887627,
8887728-8887882,8888194-8888465,8889593-8889735,
8890150-8890444
Length = 482
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 158 PCHSYTRRGRGATAVNTTTRRRGSPQGRPAD 250
PC RRG G++A T R G+ G P +
Sbjct: 51 PCDVDARRGSGSSAAAVATTRTGAVAGNPLE 81
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/119 (20%), Positives = 46/119 (38%)
Frame = +2
Query: 59 AYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPCHSYTRRGRGATAVNTTTRRRGSPQG 238
A AR E +R RA+ D + L + + + A + ++ +P+
Sbjct: 150 AAAAREQAERLIREAAAARKRARDMVDVACRVLEAEARDAKEQAAAPPSPVLTKKTTPKN 209
Query: 239 RPADGAFEANRRL*NVGRLGTAARQAAQTVPLVPRNTPLDQNQPAGSGRDTLPTGRSFV 415
A+ + + ++ ++ + A AA +TPL PAG R + GR +
Sbjct: 210 SAANRSSDKPLKINSIQKPALAFAAAAAAAAAAASSTPLSTPSPAGE-RKPMKQGRVLI 267
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +3
Query: 132 FRTHPLNDSPATLTPDEVGGLPR----STLQPDGAAHPKD 239
FR D+PAT PDE G PR L P G H KD
Sbjct: 125 FRDQSGEDTPATTKPDETAG-PRVPLGCRLAPVGIQHHKD 163
>02_05_0409 - 28723534-28724646
Length = 370
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 433 SALPRSYERATGWQCIASRPGRLVLVQRGIPGHQRHCLGGLTGCRTETADVSEP 272
+AL SY ++S G LVL++R P H H + LTG + P
Sbjct: 79 AALLSSYPVPGDATLLSSSRGHLVLLRRRDPFHGLHLVDALTGATRHALPLPSP 132
>02_03_0068 + 14711891-14712418
Length = 175
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 RGVCETQRSAGVESRSRAQGF*DPPTKRLPCHSYTRRGRGATAVNTTTRRRG-SPQGRPA 247
RG E ++ ES R + PP + RRG A++ T RRRG P R A
Sbjct: 70 RGGGEEEKEEEEESPGRRRRNGSPPQEEAQRRRCGRRGGAASSSPPTPRRRGLLPVDRAA 129
Query: 248 D 250
D
Sbjct: 130 D 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,018,692
Number of Sequences: 37544
Number of extensions: 376148
Number of successful extensions: 1445
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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