Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_F23
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical...    28   9.5  

>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 111 ADRGPKDFRTH-PLNDSPATLT-PDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSET 284
           AD G     TH  L  +P      DE+  L R  +  D   HP + +  +P  + E S T
Sbjct: 38  ADEGKSPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVT 97

Query: 285 SAVS 296
           SA S
Sbjct: 98  SAHS 101


>AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical
           protein Y48G9A.12 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -3

Query: 556 SRGSEKGPLPRLRPL*MAASPXXXXXXXXXXXXXXXRYQHXSALPRSYERATGWQCIAS 380
           SR SE G LP+++    A                   + +     R   + TGWQC+ S
Sbjct: 59  SRSSELGNLPKVKNSNFAGKSSKFSIPSTSQAPAAGTFHYNHTHTRFLAKMTGWQCVGS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,922
Number of Sequences: 27780
Number of extensions: 259915
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)