Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_F18
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.7
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 5.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 26 7.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 7.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.6
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 7.6
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 98 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 226
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 253 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 158
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 352 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPACYFSTPPFDTVLYDNIRTVLKDNKTAL 173
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 172 LSASIQASLPSSEIYRQL 119
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = -2
Query: 680 TSTRIINPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 501
TST I + +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 500 VSPP 489
S P
Sbjct: 1676 TSTP 1679
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -2
Query: 680 TSTRIINPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 501
TST I + +TP +S ++N TP P++S TP +
Sbjct: 1592 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALN 1651
Query: 500 VSPP 489
SPP
Sbjct: 1652 TSPP 1655
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 151 SLPSSEIYRQLVDSRHVSSDSFGVY 77
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 262 DPACYFSTPPFDTVLYDNIRT 200
DPA Y PFDTV D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 87 KESEETWRESTNWR*ISEEG 146
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 653 FHTPTTPDLTSISINPLTP-X*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 477
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 476 NDESQA 459
+S +
Sbjct: 196 LQKSHS 201
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 130 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 32
YRQLVD R ++ D F + K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,936
Number of Sequences: 5004
Number of extensions: 59375
Number of successful extensions: 237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -