Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_F10
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.089
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.21
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.47
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 5.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.7
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.089
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = +2
Query: 584 PPXXXPXSXMPXGQVXXPXPXPXSV---PRXPXLPXXPPXPPPP 706
PP + P P P P SV P P +P PP PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +3
Query: 585 PXRXXPXPRCPP--ARXPXXXPPPXPSPXXPXXPXP 686
P P P PP A P PPP P+ P P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +2
Query: 599 PXSXMPXGQVXXPXPXPXSVPRXPX-LPXXPPX-PPPPXXXRP 721
P S P Q P P S P P +P PP PPPP P
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.21
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = +2
Query: 584 PPXXXPXSXMPXGQVXXPXPXPXSV----PRXPXLPXXPPXPPPPXXXRPXXPXLXXAXX 751
PP P S P P P S+ P P LP P PP P P L A
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 752 XXXP 763
P
Sbjct: 475 APPP 478
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 641 PXPXSVPRXPXLPXXPPXPPPPXXXRPXXP 730
P P +P P LP P PPP P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 614 PXGQVXXPXPXPXSVPRXPXLPXX--PPXPPPP 706
P V P P P +P P P PP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 584 PPXXXPXSXMPXGQVXXPXPXPXSVPRXPXLPXXPPXPPPP 706
PP P +P P P P P P + PP PPPP
Sbjct: 732 PPPPPPAVIVPT-PAPAPIPVP---PPAPIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +2
Query: 560 PRXXXXVXPPXXXPXSXMPXGQVXXPXPXPXSVPRXPXLPXXPPXPPPP 706
P V P P P + P P P PP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/81 (23%), Positives = 23/81 (28%)
Frame = +3
Query: 561 PAXXXXSXPXRXXPXPRCPPARXPXXXPPPXPSPXXPXXPXPLPXXPLXXPXVXXXLXSX 740
P P P PP P PP P P P P P P +
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210
Query: 741 XXXTXXXXVPXYXXXLXPLPL 803
+ VP L P+P+
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPV 1231
Score = 29.1 bits (62), Expect = 0.83
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +3
Query: 585 PXRXXPXPRCPPARXPXXXPP-PXPSPXXPXXPXPLPXXPLXXPXV 719
P P PP P PP P PS P P P P+ P V
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Frame = +2
Query: 584 PPXXXPXSXMPXGQVXX---PXPXPXSVPRXPXLPXXPPXPPPPXXXRPXXPXLXXAXXX 754
PP P S +P P P P +P P P P P P P A
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123
Query: 755 XXPGXSLP 778
P + P
Sbjct: 1124 PKPSVAAP 1131
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +2
Query: 584 PPXXXPXSX---MPXGQVXXPXPXPXSVPRXPXLPXXPPXPPPP 706
PP P + +P P P P S P P P PPP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +3
Query: 615 PPARXPXXXPPPXPSPXXPXXPXPLP--XXPLXXPXV 719
PP P PP P P P P P P+ P V
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSV 1128
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +2
Query: 578 VXPPXXXPXSXMPXGQVXXPXPXPXSVPRXP-XLPXXPPXPPPPXXXRPXXPXLXXAXXX 754
V PP P P V P P P + P P PP P P P A
Sbjct: 1191 VPPPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249
Query: 755 XXPGXSLPT 781
P S+P+
Sbjct: 1250 STPRSSVPS 1258
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 600 PXPRCPPARXPXXXPPPXPSPXXPXXPXPLP 692
P PP P PP P P P P P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 600 PXPRCPPARXPXXXPPPXPSPXXPXXPXPLP 692
P R PP PP P P P P+P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = +3
Query: 549 SXXXPAXXXXSXPXRXXPXPRCPPARXPXXXPPPXPSP-XXPXXPXPLPXXP 701
S P P P PP P PP P+P P P P P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 579 SXPXRXXPXPRCPPARXPXXXPPPXPSP 662
S P P P PP P PPP P P
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 611 MPXGQVXXPXPXPXSVPRXPXLPXXPPXPPPP 706
+P G P P P P P PP PPPP
Sbjct: 4 LPPGNPPPPPPPPGFEP-----PSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -1
Query: 691 GRGXGXXGXXGDGXGGGXXXGXLAGGHRGXGXXRXG 584
GRG G G GG G GG G R G
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 322 LRSLISNLSNTCDLTPLPEWSCEQSAW 242
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,412
Number of Sequences: 5004
Number of extensions: 15236
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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