Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_F06
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 31 0.25
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 1.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 2.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 3.1
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 4.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 4.1
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 4.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.1
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.4
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 7.1
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 26 7.1
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 9.4
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 25 9.4
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 25 9.4
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 30.7 bits (66), Expect = 0.25
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +1
Query: 181 FSRNFSGAWNNEILSGLSANNILFFDSLV-HNIKLSTNISWSSYTRSILRSGKCSTIAHF 357
FS++ NN + + A ILFF+ L N ++ + ++ + I ++
Sbjct: 578 FSKHMRSVMNNNSSTDIYALGILFFELLYPFNTRMERASAIANLKKGIFPHDFLDSMPEE 637
Query: 358 GSILTWFLSAS-KRVTYPQVIFSSTNKLFEDPSIENAFMNSFLIFASRMRSN 510
S++ LS+S KR T Q++ T+ LF D + + L+ + R+N
Sbjct: 638 ASLIRSMLSSSNKRPTAAQLL---TSNLFHDLVVNELHVYQALLEDAEKRNN 686
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 260 ESKNKILFAERPDKISLFQAPEKFLLNDNDRGRPSEQDDHSRQVMLEEFFGQN 102
+ KN+ L + DKIS + PEK L ND+ + S + + + + G+N
Sbjct: 35 QQKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVSNPPHKTLKSKRQKGKN 87
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 113 KILLASLALSDRLVHLDDPDRYRSVETFRGLGTTKSYLAFRQTIFCF 253
+IL+ S S L+D R ++ TFRGL +S L Q +F F
Sbjct: 697 QILIVSKQPSPEAEELEDTFREAAIPTFRGLEIPES-LFLSQNVFVF 742
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 419 KMTCGYVTRLLADKNHVNM 363
KM Y+TRL+ D+NH++M
Sbjct: 148 KMPKEYITRLIYDRNHLSM 166
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 197 EKFLLNDNDRGRPSEQDDHSRQVMLEEFF 111
EKF+ N N PSE D S LE F
Sbjct: 51 EKFIQNVNSEDTPSEDDSMSMDAFLEGGF 79
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 166 PRSLSFSRNFSGAWNNEILSGLSANNILFFDSLVHNIKLSTNI 294
P L FSR+ G W E L + ++ ++ + + + + NI
Sbjct: 3541 PAKLVFSRDSGGVWTTEALPSMVSSTPVYHNGEIVPFRFTPNI 3583
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 368 NMEPKWAIVEHLPDLNMERVYEDHEMLV 285
N+EP+ IV LPD+ + + +D E +V
Sbjct: 199 NLEPEKQIVTALPDVVVHEITDDDEFVV 226
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 304 SYTRSILRSGKCSTIAHFGSILTWFLSASKRVTYPQVIFSSTNKLFE 444
S +S++ G CS I++ G WFLSA ++ + N L E
Sbjct: 2165 SILKSMIELG-CSYISYLGDQRRWFLSALVQIIEKSSSYEICNYLLE 2210
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 539 QQKADKIKLALERMREANIKKLFIKAFSMDGSSKSLLVDEKMTC--GYVTRLLADKNHVN 366
+QK KIK ER+ + +KA + D K LV ++ + ++LL +N +N
Sbjct: 161 EQKDKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQSKLLIRENEIN 220
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 5.4
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = -3
Query: 509 LERMREANIKKLFIKAFSMDGSSKSLLVDEKMTCGYV-TRLLADKNHVNMEPKWAIVEHL 333
++ + A I K + + L+D ++ T LL D+N V+ + K + VE L
Sbjct: 975 IDCISSAKIDNFLTKLVDLKQPGLNKLLDSLLSLSNPSTSLLTDENTVD-DNKVSSVEAL 1033
Query: 332 PDLNMERVYEDHEMLVDNLMLWTRESKNKI 243
++ V + L+ +L L TRES NK+
Sbjct: 1034 SNIQSAIVAD----LLTSLFLGTRESLNKL 1059
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 61 GCPDTEGTVLAPAPFCPKNSSSITCL 138
GCPD G + CP N + ++ L
Sbjct: 292 GCPDASGLEVLDLTICPTNGNLVSFL 317
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.1
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Frame = -3
Query: 458 SMDGSSKSLLVDEKMTCGYVTRLLADKNHVNMEPKWAIVEHLPDLNMERVYEDHEMLV-D 282
SM + +L K + G + D ++ E + + E + DL +E E+ + D
Sbjct: 51 SMSAYKEKMLRKNKESPGLEGKGNLDDQGIDEENRVRL-ERMNDLEIEGAQEEIRATIRD 109
Query: 281 NL--MLWTRESKNKIL--FAERPDKISLFQAPEKFLLNDNDRGRPSEQDDHSRQVMLEEF 114
+L ML R K K A+R D+ S P+ +D +E+ S ++
Sbjct: 110 DLLEMLKKRAFKKKAERELAQRKDRSSQVNTPDLSQRPSDDSFLSNEKLRSSEKLNRNL- 168
Query: 113 FGQNGAGASTVPSVSGHPVPPM 48
Q+ + V S SG P PPM
Sbjct: 169 --QSVLSSEAVDSSSGSPSPPM 188
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 9.4
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Frame = -3
Query: 638 IHAFERXFGX**RECEMQSLKIEFTSNQKDASFQQKADKIKLALERMREANIKKLFIKAF 459
+HAF+ + SL +F + Q++DK++ L + + + +
Sbjct: 241 VHAFQDLDAFFSLAKDTMSLADQFAEKMDGLTGTQQSDKVQQLLNKSNQLGVLR-GNHLD 299
Query: 458 SMDGSSKSLLVDEKMTCGYV-----TRLLADKNHVNMEPKWAIVEHLPDLNM 318
++ S+ S L D ++ C + TRL AD + V M WAI N+
Sbjct: 300 NVPVSANSRLYDIEL-CKSISEVLRTRLKADTDTVTMTQAWAIYNRSRKANL 350
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 271 YGRENRKTKYCLPKG 227
YG N+KT+YC+P G
Sbjct: 54 YGN-NKKTRYCMPNG 67
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 271 YGRENRKTKYCLPKG 227
YG N+KT+YC+P G
Sbjct: 54 YGN-NKKTRYCMPNG 67
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 128 SLALSDRLVHLDDPDRYRSVETFRGLGTTKSYLAFRQTIFCFSILSSI 271
++ + +RLV + DP+ Y + F L TK + + + I SSI
Sbjct: 1103 TMLMLERLVDVVDPEVYFEFDAFEDLVNTKRPVIYMKRDDILGIYSSI 1150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,352
Number of Sequences: 5004
Number of extensions: 64282
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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