Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_F06
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142...    34   0.15 
06_02_0189 - 12816751-12817088,12817272-12817330,12817745-128177...    30   2.4  
06_02_0214 + 13141213-13143741                                         28   7.4  
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    28   9.8  
01_06_1635 - 38794215-38794325,38794434-38794579,38796845-387968...    28   9.8  
01_01_0925 - 7306881-7308486,7308797-7308906                           28   9.8  

>03_02_0735 +
           10811326-10812342,10813199-10813555,10813962-10814225,
           10814894-10815010,10815796-10815944,10816315-10816606,
           10816681-10816845,10817106-10817357
          Length = 870

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -3

Query: 383 DKNHVNMEPKWAIVEHL--PDLNMERVYEDHEMLVDNLMLWTRESKNKILFAERPDKISL 210
           D+  V+M  + A++E +  P   +      ++ +V +L LW R++ +KILF  +  ++SL
Sbjct: 490 DREDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRLWCRDAIDKILFRIKQFQVSL 549

Query: 209 FQAPEKFL 186
                K++
Sbjct: 550 VLLASKYV 557


>06_02_0189 -
           12816751-12817088,12817272-12817330,12817745-12817773,
           12817808-12818013,12818245-12818329
          Length = 238

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 136 LE*SSCSLGRPRSLSFSRNFSGAWNNEILSGLSANNILFFDSLVHNIKLSTNISWSS 306
           +E + C LG PR +  + + +  WN++    +   N LF   +VH I L  +IS  S
Sbjct: 8   VEQAQCDLGGPRLVGRAAHSNDLWNDDKDWDVQKLNSLFEQEVVHKI-LQVHISQGS 63


>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 88  LAPAPFCPKNSSSITCLE*SSCSLG-RPRSLSFSRNFSGAWNNEILSGLSANNILFFD-- 258
           ++ A F P ++  + C    S +LG R  +   +       + EIL+G SAN +  FD  
Sbjct: 27  VSTAQFKPADNYLVDCGSSKSTTLGTRTFAADGAAPVKVDTSLEILAGTSANGVASFDNS 86

Query: 259 SLVHNIKLSTNISWSSYTRSILRSGK 336
           +L    ++ T  S SSYT  I + G+
Sbjct: 87  ALYQTARIFT--SPSSYTFPIQKQGR 110


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 63  SGPADGGTTLPEERLQKKKKK 1
           + PA+GG+ +PEE +++ +KK
Sbjct: 735 AAPANGGSAVPEETIERLRKK 755


>01_06_1635 -
           38794215-38794325,38794434-38794579,38796845-38796898,
           38796999-38797167
          Length = 159

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
 Frame = +1

Query: 151 CSLGRPRSLSFSRNFSGAWNNEILSGLSANNI-----LFFDSLVHNIKLSTNISWSSYTR 315
           C  G P      R F   + N+ +  +          LF DS   + +   NISWSS   
Sbjct: 58  CLDGSPPGYHLQRGFGSGFRNKFVDDVEIVKDKKDWGLFIDSCFTHCQTPFNISWSSQAS 117

Query: 316 SILRSGKCSTIAHFGSILTWFLSASKRV 399
            +L S    T+A   ++  W+   S  V
Sbjct: 118 PVLGS---KTVAE--AVGDWYFERSYEV 140


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 80  GQYWLRHRFVRKILLASLALSDRLVHLDDPDRYRSVETFRGLGTTKSYLAFRQ 238
           G+Y   H    +I   SL +S  LV    P+R R VE     G  KS+  F +
Sbjct: 12  GEYTHVHAIYIEIFTLSLPISSHLV----PERIREVELVMEFGRRKSFSFFEE 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,731,440
Number of Sequences: 37544
Number of extensions: 422339
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)