Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_F05
         (824 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   299   4e-81
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   299   4e-81
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   299   4e-81
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   299   4e-81
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   299   4e-81
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    32   1.1  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    32   1.1  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  299 bits (733), Expect = 4e-81
 Identities = 138/165 (83%), Positives = 148/165 (89%)
 Frame = -1

Query: 590 HKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
           H +  P +  K LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 247 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 306

Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 307 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 366

Query: 230 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 367 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411



 Score =  131 bits (316), Expect = 1e-30
 Identities = 57/71 (80%), Positives = 63/71 (88%)
 Frame = -2

Query: 787 VKQGQKKAHIMEIQLNRGTIEDKVKWPREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKG 608
           +KQ QKKAH+MEIQLN G+IEDKVKW REH EKPI V +VF QDEMIDC+GVTK KG+KG
Sbjct: 182 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 241

Query: 607 VTSRWHTKKLP 575
           VTSRWHTKKLP
Sbjct: 242 VTSRWHTKKLP 252


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  299 bits (733), Expect = 4e-81
 Identities = 138/165 (83%), Positives = 148/165 (89%)
 Frame = -1

Query: 590 HKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
           H +  P +  K LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 230 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score =  131 bits (316), Expect = 1e-30
 Identities = 57/71 (80%), Positives = 63/71 (88%)
 Frame = -2

Query: 787 VKQGQKKAHIMEIQLNRGTIEDKVKWPREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKG 608
           +KQ QKKAH+MEIQLN G+IEDKVKW REH EKPI V +VF QDEMIDC+GVTK KG+KG
Sbjct: 171 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 230

Query: 607 VTSRWHTKKLP 575
           VTSRWHTKKLP
Sbjct: 231 VTSRWHTKKLP 241


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  299 bits (733), Expect = 4e-81
 Identities = 138/165 (83%), Positives = 148/165 (89%)
 Frame = -1

Query: 590 HKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
           H +  P +  K LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 230 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score =  131 bits (316), Expect = 1e-30
 Identities = 57/71 (80%), Positives = 63/71 (88%)
 Frame = -2

Query: 787 VKQGQKKAHIMEIQLNRGTIEDKVKWPREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKG 608
           +KQ QKKAH+MEIQLN G+IEDKVKW REH EKPI V +VF QDEMIDC+GVTK KG+KG
Sbjct: 158 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 217

Query: 607 VTSRWHTKKLP 575
           VTSRWHTKKLP
Sbjct: 218 VTSRWHTKKLP 228


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  299 bits (733), Expect = 4e-81
 Identities = 138/165 (83%), Positives = 148/165 (89%)
 Frame = -1

Query: 590 HKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
           H +  P +  K LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 223 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 282

Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 230 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score =  131 bits (316), Expect = 1e-30
 Identities = 57/71 (80%), Positives = 63/71 (88%)
 Frame = -2

Query: 787 VKQGQKKAHIMEIQLNRGTIEDKVKWPREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKG 608
           +KQ QKKAH+MEIQLN G+IEDKVKW REH EKPI V +VF QDEMIDC+GVTK KG+KG
Sbjct: 158 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 217

Query: 607 VTSRWHTKKLP 575
           VTSRWHTKKLP
Sbjct: 218 VTSRWHTKKLP 228


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  299 bits (733), Expect = 4e-81
 Identities = 138/165 (83%), Positives = 148/165 (89%)
 Frame = -1

Query: 590 HKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 411
           H +  P +  K LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KD
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKD 295

Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
           GKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 230 KRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
           KR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score =  131 bits (316), Expect = 1e-30
 Identities = 57/71 (80%), Positives = 63/71 (88%)
 Frame = -2

Query: 787 VKQGQKKAHIMEIQLNRGTIEDKVKWPREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKG 608
           +KQ QKKAH+MEIQLN G+IEDKVKW REH EKPI V +VF QDEMIDC+GVTK KG+KG
Sbjct: 171 IKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKG 230

Query: 607 VTSRWHTKKLP 575
           VTSRWHTKKLP
Sbjct: 231 VTSRWHTKKLP 241


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 558  LGVSY-GGSFFVCQREVTPLYPLXLVTPMQSIIS---SWANTESTGIGFSXCSLGHFTLS 725
            +GV + GG FF C  E+  L P+  V      I    +W N++ T   F    +G+  L 
Sbjct: 1044 MGVQFFGGKFFKCVNEMGELLPITEVNDKWDCIEQNYTWINSKIT---FDHVGMGYLALL 1100

Query: 726  SMVPRLSWISIM 761
             +     W+ +M
Sbjct: 1101 QVATFEGWMEVM 1112


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 558  LGVSY-GGSFFVCQREVTPLYPLXLVTPMQSIIS---SWANTESTGIGFSXCSLGHFTLS 725
            +GV + GG FF C  E+  L P+  V      I    +W N++ T   F    +G+  L 
Sbjct: 1753 MGVQFFGGKFFKCVNEMGELLPITEVNDKWDCIEQNYTWINSKIT---FDHVGMGYLALL 1809

Query: 726  SMVPRLSWISIM 761
             +     W+ +M
Sbjct: 1810 QVATFEGWMEVM 1821


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,911,670
Number of Sequences: 53049
Number of extensions: 839567
Number of successful extensions: 2305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2305
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)