Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_F02
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 194 5e-50
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 192 4e-49
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.7
06_03_0543 + 21967787-21970261 29 5.7
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 29 5.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 7.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 7.6
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 28 10.0
10_04_0010 - 7487455-7489490,7489569-7489980 28 10.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 194 bits (474), Expect = 5e-50
Identities = 87/142 (61%), Positives = 111/142 (78%)
Frame = -3
Query: 739 SRPFGQRAVLKFAAHTGATXIAERFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEAS 560
+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESA 142
Query: 559 YVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDRRWDVV 380
NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+
Sbjct: 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVM 202
Query: 379 VDLFFYRDPEESEKDEQQAKEQ 314
VDLFFYRDPEE+++ E++A Q
Sbjct: 203 VDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 192 bits (467), Expect = 4e-49
Identities = 85/138 (61%), Positives = 108/138 (78%)
Frame = -3
Query: 739 SRPFGQRAVLKFAAHTGATXIAERFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEAS 560
+RP+GQRAVLKFA +TGA IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESA 142
Query: 559 YVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDRRWDVV 380
NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+
Sbjct: 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVM 202
Query: 379 VDLFFYRDPEESEKDEQQ 326
VDLFFYRDPEE+++ E++
Sbjct: 203 VDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 206 TRCSSCFWSTPCSRRMVCPGTR 141
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 707 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 600
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 457 LMWWLLAREVLRLRGVLPRDRRWDVVVDLF 368
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 100 RWRRLVWRQLCSTHLVPGQTILLEQGVLQKQ 192
RW+R + +QL H Q +LLEQ +L Q
Sbjct: 497 RWKRDIQKQLRRKHFQKNQGLLLEQLILSDQ 527
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +3
Query: 471 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 650
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 651 KAPGVKRSAIXVA 689
K + + + V+
Sbjct: 64 KRSRINAALLFVS 76
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 697 HTGATXIAERFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 524
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 523 DSPLR 509
+ P++
Sbjct: 330 EQPMQ 334
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 447 GCWHVKC*GFVVCFPVTGAGMLWLICS-STVTLKKVKRMNNKPRNRLWYQLN 295
G WH K ++ + V GAG W + S V +N PR L Y N
Sbjct: 252 GIWHTKRKSYLKPYLVNGAGSAWTMMSRQFAEYFTVGYDDNLPRTLLLYYTN 303
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 16 WLSCNIINQCRVFMQHSSLERIHPTRALRWRRLVWRQL-----CSTHLVPGQTILLEQGV 180
W I N+C ++ H SL+ I L R+ W +L H PG+ ++ +
Sbjct: 272 WRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL 331
Query: 181 LQKQELQRVQQAG 219
+K ++ G
Sbjct: 332 SRKSHCNTLEVRG 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,512,162
Number of Sequences: 37544
Number of extensions: 436820
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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