Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_E22
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.9  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 561 CPSVLSWHASTRAANVNLVDTNFAALYLNSGVVSCTIL 674
           CP  +SW  +     V+L+ T   A Y  +  +   IL
Sbjct: 246 CPIKVSWRGNYSCLKVDLIFTRDRAFYFTTVFIPGIIL 283


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 561 CPSVLSWHASTRAANVNLVDTNFAALYLNSGVVSCTIL 674
           CP  +SW  +     V+L+ T   A Y  +  +   IL
Sbjct: 297 CPIKVSWRGNYSCLKVDLIFTRDRAFYFTTVFIPGIIL 334


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 561 CPSVLSWHASTRAANVNLVDTNFAALYLNSGVVSCTIL 674
           CP  +SW  +     V+L+ T   A Y  +  +   IL
Sbjct: 246 CPIKVSWRGNYSCLKVDLIFTRDRAFYFTTVFIPGIIL 283


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 167 YCVFCGLHAST 135
           YCV CGLH  T
Sbjct: 542 YCVACGLHRDT 552


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 41  HR*EPGCIREILG 79
           H  EP CI E+LG
Sbjct: 330 HTPEPDCIHELLG 342


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 395 LGHSVTLLHLPDTFAASLL 451
           L +  T +H  DT+AAS++
Sbjct: 142 LAYQATKIHAVDTYAASVV 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 542 PQLPTDVPIGALVARVHTGR*C 607
           PQLPT+  + AL   +H    C
Sbjct: 455 PQLPTEESVDALCNTLHHWHHC 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,703
Number of Sequences: 438
Number of extensions: 2992
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)