Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_D22
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.031
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.093
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 8.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.031
Identities = 28/92 (30%), Positives = 30/92 (32%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXXAPXXXXLXXXPPXPP 551
PP PA P PP P P + P+ P L PP P
Sbjct: 124 PPSAPAPPT----PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP--PPAQP 177
Query: 552 AXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXS 647
A A PP P L S P P PP P S
Sbjct: 178 A--APVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.093
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 525 LXXXPPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAP 641
L PP PPA P P P PPPPP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 32.3 bits (70), Expect = 0.093
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 540 PXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPA 638
P P PPP P + P PPPPPA
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 540 PXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAP 641
P PP + PPP P PPPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.50
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 537 PPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXS 647
P PPA PPP P + PPPPP S
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.16
Identities = 34/132 (25%), Positives = 37/132 (28%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXXAPXXXXLXXXPPXPP 551
PP P+ P L P P P R + A G + P PP PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR--SNAAGSI-----PLPPQGRSAPPPPP 365
Query: 552 AXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXSXXYXXXXXPXXXXSXXXFFPXXPXXXXX 731
A P P S P PPPA P S P
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPA-IPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 732 TLAPPSXXSSXP 767
APPS S P
Sbjct: 425 PSAPPSLPPSAP 436
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/102 (23%), Positives = 33/102 (32%)
Frame = +3
Query: 537 PPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXSXXYXXXXXPXXXXSXXXFFPXXP 716
PP PP+ + + PP P P PPP+ + P + P
Sbjct: 230 PPIPPS---IPSSRPPERVPSLSAPAPPPIPPPSNGTVS-SPPNSPPRPIAPVSMNPAIN 285
Query: 717 XXXXXTLAPPSXXSSXPXIKHXKXKXIPRPLPXXXFRAHPXV 842
L PPS S + K + P P P R P +
Sbjct: 286 STSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPI 327
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/101 (28%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXG------LXPXPXPGRLXNRAXGPVXRXXAPXXXXLXX 533
PP P + P+ PP G P P P L A P AP +
Sbjct: 388 PPAPPPAIPGRSAPAL---PPLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAPPSLPMGA 443
Query: 534 X--PPXPPAXCAVXAXP---PPXPXLXSXXPXTXPPPPPAP 641
PP PP+ P P P L P P P PAP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 6.1
Identities = 25/96 (26%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Frame = +3
Query: 372 PPXXPAXVAXXXXP----SXXXXPPXGLXPXPXPGRLXNRAXG--PVXRXXAPXXXXLXX 533
PP P A P S PP P P + P AP L
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 534 XPPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAP 641
P P A PP P P P P AP
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 537 PPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPP 635
PP PP PP S PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 576 PPPXPXLXSXXPXTXPPPPPAP 641
PPP P P + PPPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.28
Identities = 23/93 (24%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPX---GLXPXPXPGRLXNRAXGPVXRXXAPXXXXLXXXPP 542
PP VA P+ PP + P P P P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 543 XPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAP 641
P V PPP P PP P P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/92 (27%), Positives = 27/92 (29%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXXAPXXXXLXXXPPXPP 551
PP VA P+ P G+ P P P P P PP PP
Sbjct: 1159 PPVPKPSVAAPPVPA----PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSV--GVPPVPP 1212
Query: 552 AXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXS 647
A P P PP PAP S
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
Score = 29.5 bits (63), Expect = 0.66
Identities = 25/92 (27%), Positives = 26/92 (28%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXXAPXXXXLXXXPPXPP 551
PP VA P P + P P P P AP PP P
Sbjct: 1092 PPVPKPSVAAPPVPK----PSVAVPPVPAPS---GAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Query: 552 AXCAVXAXPPPXPXLXSXXPXTXPPPPPAPXS 647
A P P P PP PAP S
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = +3
Query: 507 APXXXXLXXXPPXPPAXCAVXAXPPPXPXLXSXXP----XTXPPPPPAP 641
AP PP P + + PPP P S P + PP PAP
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/97 (20%), Positives = 25/97 (25%)
Frame = +3
Query: 351 PLXXXXXPPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXXAPXXXXLX 530
P+ P P + P P P P P P P +
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI- 1091
Query: 531 XXPPXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPAP 641
PP P A P P + + PP P P
Sbjct: 1092 --PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 25.8 bits (54), Expect = 8.1
Identities = 26/100 (26%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Frame = +3
Query: 372 PPXXPAXVAXXXXPSXXXXPPXGLXPXPXPGRLXNRAXGPVXRXX--APXXXXLXXXPPX 545
PP VA P+ PP P PV + AP PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 546 PPAXCAVXAXP------PPXPXLXSXXPXTXPP--PPPAP 641
P A P PP P + P PP PP P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 540 PXPPAXCAVXAXPPPXPXLXSXXPXTXPPPPPA 638
P PP PP P + + P PPP PA
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +3
Query: 537 PPXPPAXCA---VXAXPPPXPXLXSXXPXTXPPPPPAPXS 647
PP P A + A PP P + P + PP P P S
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS 1729
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 537 PPXPPAXCAVXAXPPPXPXLXSXXPXTXPPP 629
PP P AV PPP P S P P P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -2
Query: 640 GAGGG-GGXVXGXXXXRXGXGGGXAXTAXXAGGXGG 536
G GG GG G R G GG +GG GG
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 318 LRSLISNLSNTCDLTPLPEWSCEQSAW 238
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,156
Number of Sequences: 5004
Number of extensions: 18284
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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