Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_D21
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.004
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.066
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.087
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.61
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.61
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.004
Identities = 36/155 (23%), Positives = 41/155 (26%), Gaps = 1/155 (0%)
Frame = +1
Query: 370 PPPXPXXAXXXTXLXGLXXXPXXPPPXSPXXXPXXXXXXXXXXPPXXGAXXCSXXXXSLP 549
PPP P + + PPP P P PP + S P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP----PPLSSSRAVSNPPAPPP 393
Query: 550 X-PXXXXPPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPX 726
P P P S P +P + P PP PP P P PP
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPP----SLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 727 PXXPPXXLXFXXSXPPIRPLXXXLPXYXXXLXPPP 831
P P P PL P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +1
Query: 646 VPXXSXPLPPPXPPP--XXPXXXPXXPPXPXXP 738
VP S P PPP PPP P PP P P
Sbjct: 245 VPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 29.5 bits (63), Expect = 0.61
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Frame = +1
Query: 568 PPXXPRPXXXXXSPX-PXXXXXLXSXXVPXXSXP-LPPPXPPPXXPXXXPXXP-PXPXXP 738
PP P +P P + P + P LPP PP P P P P P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 739 PXXLXFXXSXPPIRPLXXXLPXYXXXLXPPPP 834
P PP P+ LP P PP
Sbjct: 448 P--------LPPSAPIAPPLPAGMPAAPPLPP 471
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.066
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Frame = -3
Query: 833 GGGGXXXXXXXGXXXXXGRMGGXXXXXXXXXGGXXGXGGXXGXXXGXXG--GGXGGGRGX 660
GGG G G GG G G GG G G G GG GGG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 659 XSXG 648
G
Sbjct: 254 FGGG 257
Score = 29.1 bits (62), Expect = 0.81
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -3
Query: 782 GRMGGXXXXXXXXXGGXXGXGGXXGXXXGXXGGGXGG-GRGXXSXG 648
G GG GG G G G G GGG GG G G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.3 bits (70), Expect = 0.087
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 782 GRMGGXXXXXXXXXGGXXGXGGXXGXXXGXXGGGXGGGRG 663
G GG G G GG G G GGG GG RG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 740 GGXXGXGGXXGXXXGXXGGGXGGGRGXXSXG 648
GG G G G G GG GGGRG G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -3
Query: 740 GGXXGXGGXXGXXXGXXGGGXGGGRGXXSXGTXXEXXXXXXXGXGXXXXXXGRGXXGG 567
GG G G G GGG GG RG G G GRG G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -3
Query: 782 GRMGGXXXXXXXXXGGXXGXGGXXGXXXGXXGGGXGGGRG 663
GR G GG G GG G G GG GG +G
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARGGRGGS-SGGRGGAKG 69
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = -3
Query: 833 GGGGXXXXXXXGXXXXXGRMGGXXXXXXXXXGGXXGXGGXXGXXXGXXGGGXGGGR 666
G GG G GG GG G G G G GG GG +
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Frame = +1
Query: 568 PPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPXPXXPPXX 747
PP P P P P + P S P P P P P P P PP
Sbjct: 124 PPSAPAP------PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPI-PSSLPPPAQ 176
Query: 748 LXFXXSXPPIRP-LXXXLPXYXXXLXPPP 831
PP P L +P + PPP
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +1
Query: 571 PXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPXPXX-PPXX 747
P P P P P + S +P + P P PP P PP P PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSS-LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Query: 748 L 750
L
Sbjct: 206 L 206
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/89 (23%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 GAXXCSXXXXSLPXPXXXXPPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPP 690
G S S P P P P P + +P + P+P PPP
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Query: 691 XXPXXXPXXPP-XPXXPPXXLXFXXSXPP 774
P PP P P PP
Sbjct: 175 AQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 649 PXXSXPLPPPXPPPXXPXXXPXXPPXPXXPP 741
P S P PPP P P P PP P PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPP--PSAPPMPAGPP 1728
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 545 SLXPXPXXPPXLPAPPXGPXPP 610
S+ P P PP PP P PP
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +1
Query: 649 PXXSXPLPPPXPPPXXPXXXPXXPPXP 729
P +PPP P P P PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 673 PPXPPPXXPXXXPXXPPXPXXPPXXLXFXXSXPPIRPLXXXLPXYXXXLXPPPP 834
PP PPP P P P PP + PP P + PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI---MGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +1
Query: 580 PRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPXPXXPP 741
P P P P P P PPP PPP P PP P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-PPPGVAGAGP--PPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 649 PXXSXPLPPPXPPPXXPXXXPXXPPXPXXPPXXLXFXXSXPPIRP 783
P P P P P P P P P PP + PP P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.61
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 664 PLPPPXPPPXXPXXXPXXPPXP 729
P PPP PP P P PP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 664 PLPPPXPPPXXPXXXPXXPPXPXXP 738
P PP PPP P PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 667 LPPPXPPPXXPXXXPXXPPXPXXPP 741
LPP PPP P P P PP
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.61
Identities = 29/154 (18%), Positives = 35/154 (22%)
Frame = +1
Query: 373 PPXPXXAXXXTXLXGLXXXPXXPPPXSPXXXPXXXXXXXXXXPPXXGAXXCSXXXXSLPX 552
PP P P PPP PP +P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP----VPK 1096
Query: 553 PXXXXPPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPXPX 732
P PP P P + V P+P PP P P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 733 XPPXXLXFXXSXPPIRPLXXXLPXYXXXLXPPPP 834
P + PP+ +P PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 27.9 bits (59), Expect = 1.9
Identities = 32/155 (20%), Positives = 41/155 (26%)
Frame = +1
Query: 370 PPPXPXXAXXXTXLXGLXXXPXXPPPXSPXXXPXXXXXXXXXXPPXXGAXXCSXXXXSLP 549
P P P A + P P +P P P + P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV-PKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 550 XPXXXXPPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPPXPPPXXPXXXPXXPPXP 729
P P P+P P P + VP + +PP PP P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAP-PVPAPSSGIPP--VPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 730 XXPPXXLXFXXSXPPIRPLXXXLPXYXXXLXPPPP 834
PP + PP+ LP PP
Sbjct: 1209 PVPP-----PSTAPPVPTPSAGLPPVPVPTAKAPP 1238
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 740 GGXXGXGGXXGXXXGXXGGGXGGGRGXXSXG 648
GG G GG G G GGG G GRG G
Sbjct: 454 GGFGGRGGFGGR--GGFGGGRGRGRGGARSG 482
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/82 (25%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Frame = +1
Query: 499 PPXXGAXXCSXXXXSLPXPXXXXPPXXPRPXXXXXSPXPXXXXXLXSXXVPXXSXPLPPP 678
PP + SLP PP P P + S S +PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSG-RAVSPEIPPT 226
Query: 679 XPPPXX-PXXXPXXPPXPXXPP 741
P P P PP P PP
Sbjct: 227 YTPKQADPLPAPPPPPPPTLPP 248
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = -3
Query: 782 GRMGGXXXXXXXXXGGXXGX--GGXXGXXXGXXGGG-XGGGRGXXSXGT 645
G GG GG G GG G G GGG GG RG G+
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGS 186
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = +1
Query: 649 PXXSXPLPPPXPPPXXPXXXPXXPPXPXXPPXXL-XFXXSXPPIRP 783
P S P PP P P P P P L PP+RP
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRP 145
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 326 LRSLISNLSNTCDLTPLPEWSCEQSAW 246
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,284
Number of Sequences: 5004
Number of extensions: 20838
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -