Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_D08
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 146 2e-35
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 146 2e-35
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 146 2e-35
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 146 2e-35
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 146 2e-35
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 146 2e-35
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 142 3e-34
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 142 3e-34
AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl cyc... 30 1.7
Z32679-5|CAA83594.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.8
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 167 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 226
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 286
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 287 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 336
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
Query: 117 KDRIRE 100
+D + E
Sbjct: 391 RDFLAE 396
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 176 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 234
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 235 WHTKKLPRKTHKGLRKVACI 254
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 167 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 226
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 286
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 287 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 336
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
Query: 117 KDRIRE 100
+D + E
Sbjct: 391 RDFLAE 396
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 176 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 234
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 235 WHTKKLPRKTHKGLRKVACI 254
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 69 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 128
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 129 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 188
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 189 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 238
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 292
Query: 117 KDRIRE 100
+D + E
Sbjct: 293 RDFLAE 298
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 78 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 136
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 137 WHTKKLPRKTHKGLRKVACI 156
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 167 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 226
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 286
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 287 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 336
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
Query: 117 KDRIRE 100
+D + E
Sbjct: 391 RDFLAE 396
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 176 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 234
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 235 WHTKKLPRKTHKGLRKVACI 254
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 69 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 128
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 129 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 188
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 189 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 238
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 233 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 292
Query: 117 KDRIRE 100
+D + E
Sbjct: 293 RDFLAE 298
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 78 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 136
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 137 WHTKKLPRKTHKGLRKVACI 156
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 146 bits (354), Expect = 2e-35
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = -1
Query: 796 QMKLLNSDQRGSHY-GIQLNGGTIETK*MXQRTSGETYPCRFCVCPR*ND*LHWCHPRAK 620
QMK+L Q+ +H IQ+NGGTIE K R E V + R
Sbjct: 167 QMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGH 226
Query: 619 DTKVSLLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 440
K + P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYR
Sbjct: 227 GFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYR 286
Query: 439 IGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
IG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 287 IGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 336
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 331 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
Query: 117 KDRIRE 100
+D + E
Sbjct: 391 RDFLAE 396
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -2
Query: 771 KEAHIMESNLTVVPSRQS-EWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSL 595
K+AH++E + Q +W REHLEK + VD+VFAQDEMID IGVT+G + S
Sbjct: 176 KKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGV-TSR 234
Query: 594 AHKEATP*DTPRXLGKLPAL 535
H + P T + L K+ +
Sbjct: 235 WHTKKLPRKTHKGLRKVACI 254
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 142 bits (344), Expect = 3e-34
Identities = 64/102 (62%), Positives = 81/102 (79%)
Frame = -1
Query: 586 RSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 407
+ P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 406 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 117 KDRIRE 100
+D + E
Sbjct: 343 RDFLAE 348
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -3
Query: 629 KGKGYKGVTSRWHTKKLPRKTHQG 558
+G G+KGVTSRWHTKKLPRKTH+G
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKG 199
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 142 bits (344), Expect = 3e-34
Identities = 64/102 (62%), Positives = 81/102 (79%)
Frame = -1
Query: 586 RSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 407
+ P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 406 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 281
KNN STE+DL++K+ITPMGGFP YG VN D++M++G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -2
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 117 KDRIRE 100
+D + E
Sbjct: 343 RDFLAE 348
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -3
Query: 629 KGKGYKGVTSRWHTKKLPRKTHQG 558
+G G+KGVTSRWHTKKLPRKTH+G
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKG 199
>AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl cyclase
protein 21 protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 212 FSSAALFVCTRRDFLRVMIRFLGPMQQPLNHHKVVVYFTIM 334
FS LF+ + FL+++IR+L + P+++H VV T M
Sbjct: 1049 FSLNKLFIV--KSFLKLLIRYLQMRRHPISNHNVVTVKTCM 1087
>Z32679-5|CAA83594.2| 408|Caenorhabditis elegans Hypothetical
protein C05B5.6 protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 160 ESTMTELGRGV-NEF--EVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLESSQSRCLLHH 330
++T LG G+ +EF +D F C +RLSK++ LFR + + C H
Sbjct: 288 QATSLSLGSGMFSEFFKHIDHFKSLKFCFFGKRLSKNHIELFRDNVIAKSVNLESCTFEH 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,949,870
Number of Sequences: 27780
Number of extensions: 423932
Number of successful extensions: 1129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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