Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_D06
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 159 5e-40
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 155 6e-39
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.9
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.8
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 5.8
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 159 bits (386), Expect = 5e-40
Identities = 76/113 (67%), Positives = 86/113 (76%)
Frame = -1
Query: 693 GATPIAERFTPGVFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 514
GAT IA RFTPG FTN I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 97 GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSIL 156
Query: 513 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDP
Sbjct: 157 NHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 32.7 bits (71), Expect = 0.067
Identities = 22/54 (40%), Positives = 24/54 (44%)
Frame = -3
Query: 829 LXXTXEKLFWLXGAXVAIREPXLRVCHFHQGPFGXXXVLKFAAHTRCYAYCGTF 668
L T EKL L +A E VC +G VLKFAAHT A G F
Sbjct: 53 LGKTWEKLV-LAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 155 bits (377), Expect = 6e-39
Identities = 75/113 (66%), Positives = 85/113 (75%)
Frame = -1
Query: 693 GATPIAERFTPGVFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPL 514
GAT IA RFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 98 GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSIL 157
Query: 513 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDP
Sbjct: 158 NHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/54 (42%), Positives = 25/54 (46%)
Frame = -3
Query: 829 LXXTXEKLFWLXGAXVAIREPXLRVCHFHQGPFGXXXVLKFAAHTRCYAYCGTF 668
L T EKL L +A E VC P+G VLKFAAHT A G F
Sbjct: 54 LGKTWEKLV-LAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 441 AR 436
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 419 VVCFPVTSAGMLWLICSSTVTPEESEKD 336
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 705 PRTPGATPIAERFTP-GVFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVI 541
P TP PIA++ P V IQA+ + R L P + + YVN V+
Sbjct: 247 PSTPSVLPIAKQLAPMNVCKAHIQAS-NQSRTLTTASPPEQIPLMEPQVYVNPQVL 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,438
Number of Sequences: 5004
Number of extensions: 60714
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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