Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_D02
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   122   5e-29
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   122   8e-29
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.4  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    27   3.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.1  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  122 bits (295), Expect = 5e-29
 Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
 Frame = -2

Query: 727 RGPXIXFNKDSGFDSRXPQHXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 548
           RGP + FN+D+G      ++ PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDAGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 547 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 374
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 373 NKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 275
              + +LNPYA     KA ++L   K  KA  +
Sbjct: 324 KAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354



 Score = 33.9 bits (74), Expect = 0.027
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 803 ILKVYKXQXXRAGKG*MRNRRXIQRKG 723
           ++KV   +  RAGKG +RNRR +QR+G
Sbjct: 180 VVKVANSRKLRAGKGKLRNRRHVQRRG 206


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  122 bits (293), Expect = 8e-29
 Identities = 68/153 (44%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
 Frame = -2

Query: 727 RGPXIXFNKDSGFDSRXPQHXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 548
           RGP + FN+D+G      ++ PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDTGIVKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 547 FGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 374
           FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 373 NKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 275
              + +LNPYA     KA +++   K  KA  +
Sbjct: 324 KAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 803 ILKVYKXQXXRAGKG*MRNRRXIQRKG 723
           ++KV   +  RAGKG +RNRR +QR+G
Sbjct: 180 VIKVANSRKLRAGKGKLRNRRHVQRRG 206


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 27/109 (24%), Positives = 46/109 (42%)
 Frame = -2

Query: 523  KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 344
            KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730  KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 343  AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 197
              +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788  PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +2

Query: 341 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 502
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 457 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 284
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 283 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 194
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 600 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 466
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 627 RFSLLTFRSSTPGXCCGXRESXPESLLXIMXGP 725
           +F   TFR   PG C   R S  E +L    GP
Sbjct: 218 QFGYRTFRDIRPGECVFIRRSNREDILAGFRGP 250


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 594 VSSSGLSPHSAGLTPYSGHGRHHRNK 517
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -2

Query: 475 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 299
           ++T  LK DE+RK+    N +       L  + +++   + L+    + K +  +EL   
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422

Query: 298 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 200
            N   LA+ E   LKL +        + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,083
Number of Sequences: 5004
Number of extensions: 43221
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)