Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_D02
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   110   1e-24
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    30   1.7  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.8  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    28   9.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  110 bits (264), Expect = 1e-24
 Identities = 53/142 (37%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
 Frame = -2

Query: 724 GPXIXFNKDSGFDSRXPQHXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLF 545
           GP + + +D+   +R  ++ PGV+           LAPGGHLGR +IWT+SAF +LD ++
Sbjct: 205 GPVVIYGQDAEC-ARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIY 263

Query: 544 GSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNK 368
           G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  +      NPL    
Sbjct: 264 GTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRT 323

Query: 367 AMLKLNPYAAVLKRKAILELRR 302
            + KLNPYA++L++ +   +++
Sbjct: 324 LLYKLNPYASILRKASKANVKK 345



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 803 ILKVYKXQXXRAGKG*MRNRRXIQRKG 723
           I KVY  +  RAGKG +RNR+  Q+ G
Sbjct: 179 IEKVYNSKRNRAGKGKLRNRQHKQKLG 205


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -3

Query: 597 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 427
           + ++S   P+S   TP S     G+ HR     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 426 LPTNA*SVLHAN*TRSPIT 370
           LP+ + S  + N +   +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 379 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 200
           T++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411

Query: 199 K 197
           +
Sbjct: 412 E 412


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -2

Query: 523 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 344
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 343 AAVLKRKAILELR------RRKNLKALADAEKSGLK 254
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 478 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 323
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 478 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 323
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -2

Query: 598  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 419
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 418  KRVI 407
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -2

Query: 598  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 419
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 418  KRVI 407
            K  +
Sbjct: 2849 KEFV 2852


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 478 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 323
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -2

Query: 523 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 344
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+  
Sbjct: 35  KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 343 AAVLKRKAILELR------RRKNLKALADAEKSGLK 254
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,141
Number of Sequences: 27780
Number of extensions: 253959
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)