Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_C23
         (822 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41162-1|AAC41947.1|  684|Homo sapiens alpha-3 type IX collagen ...    31   5.0  
BC011705-1|AAH11705.1|  684|Homo sapiens collagen, type IX, alph...    31   5.0  
AL035669-11|CAI95767.2|  191|Homo sapiens collagen type IX alpha...    31   5.0  
AL035669-10|CAC12750.1|  684|Homo sapiens collagen type IX alpha...    31   5.0  
AF026802-1|AAD47357.1|  684|Homo sapiens alpha-3 type IX collage...    31   5.0  
BC104823-1|AAI04824.1|  277|Homo sapiens NK6 homeobox 2 protein.       31   6.7  
BC101635-1|AAI01636.1|  277|Homo sapiens NK6 homeobox 2 protein.       31   6.7  
AL392043-3|CAI39943.1|  277|Homo sapiens NK6 transcription facto...    31   6.7  
AF184215-1|AAK13251.1|  277|Homo sapiens GTX protein.                  31   6.7  

>L41162-1|AAC41947.1|  684|Homo sapiens alpha-3 type IX collagen
           protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 706 PPGPAGNGADALGGTPSILG-AGPPHGV 786
           PPGP G G   L G P   G +GPP G+
Sbjct: 108 PPGPPGLGGKGLPGPPGEAGVSGPPGGI 135


>BC011705-1|AAH11705.1|  684|Homo sapiens collagen, type IX, alpha 3
           protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 706 PPGPAGNGADALGGTPSILG-AGPPHGV 786
           PPGP G G   L G P   G +GPP G+
Sbjct: 108 PPGPPGLGGKGLPGPPGEAGVSGPPGGI 135


>AL035669-11|CAI95767.2|  191|Homo sapiens collagen type IX alpha 3
           protein.
          Length = 191

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 706 PPGPAGNGADALGGTPSILG-AGPPHGV 786
           PPGP G G   L G P   G +GPP G+
Sbjct: 71  PPGPPGLGGKGLPGPPGEAGVSGPPGGI 98


>AL035669-10|CAC12750.1|  684|Homo sapiens collagen type IX alpha 3
           protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 706 PPGPAGNGADALGGTPSILG-AGPPHGV 786
           PPGP G G   L G P   G +GPP G+
Sbjct: 108 PPGPPGLGGKGLPGPPGEAGVSGPPGGI 135


>AF026802-1|AAD47357.1|  684|Homo sapiens alpha-3 type IX collagen
           protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 706 PPGPAGNGADALGGTPSILG-AGPPHGV 786
           PPGP G G   L G P   G +GPP G+
Sbjct: 108 PPGPPGLGGKGLPGPPGEAGVSGPPGGI 135


>BC104823-1|AAI04824.1|  277|Homo sapiens NK6 homeobox 2 protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 712 GPAGNGADALGGTPSILGAGPPHGV 786
           GPAG  A ALGG  + L  G PHG+
Sbjct: 36  GPAGFKAPALGGLGAQLPLGTPHGI 60


>BC101635-1|AAI01636.1|  277|Homo sapiens NK6 homeobox 2 protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 712 GPAGNGADALGGTPSILGAGPPHGV 786
           GPAG  A ALGG  + L  G PHG+
Sbjct: 36  GPAGFKAPALGGLGAQLPLGTPHGI 60


>AL392043-3|CAI39943.1|  277|Homo sapiens NK6 transcription factor
           related, locus 2 (Drosophila) protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 712 GPAGNGADALGGTPSILGAGPPHGV 786
           GPAG  A ALGG  + L  G PHG+
Sbjct: 36  GPAGFKAPALGGLGAQLPLGTPHGI 60


>AF184215-1|AAK13251.1|  277|Homo sapiens GTX protein.
          Length = 277

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 712 GPAGNGADALGGTPSILGAGPPHGV 786
           GPAG  A ALGG  + L  G PHG+
Sbjct: 36  GPAGFKAPALGGLGAQLPLGTPHGI 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,238,959
Number of Sequences: 237096
Number of extensions: 2786825
Number of successful extensions: 9095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9095
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)