Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_C23
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 671 PSWPFWR*A*FVLPARLEMARTHSAEP 751
           P W   + +  ++P  + M RTHS  P
Sbjct: 45  PLWTGKQISSLIIPGNVNMIRTHSTXP 71


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 377 WNCIGIIGSKM*YFYHNILMNLYVL 303
           WN +G+ G+ + YF   I  +  VL
Sbjct: 442 WNVLGVQGALLSYFIEPIYFHSIVL 466


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 335 KNITSLIQ*YLCSSRLETPLLTFQ 406
           + ++S+   Y C  R E P+++FQ
Sbjct: 644 EEVSSIETNYECGLRFEDPMISFQ 667


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 568 AWLSLVVVSIVVPTG 612
           A LSLVVV++ + TG
Sbjct: 60  AMLSLVVVTVAISTG 74


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 602 YQQVWLLLGLAPCCW 646
           Y  +  ++G  PCCW
Sbjct: 476 YDGIRDMIGYYPCCW 490


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 602 YQQVWLLLGLAPCCW 646
           Y  +  ++G  PCCW
Sbjct: 529 YDGIRDMIGYYPCCW 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,593
Number of Sequences: 438
Number of extensions: 5268
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)