Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_C15
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    29   0.79 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    27   4.2  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   5.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.5  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   9.7  

>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 224 LGSLKDSLHQCYVSGIARVHAL 289
           L   KD +H+C + G+ R+H L
Sbjct: 63  LSEFKDPIHKCIILGLGRIHTL 84


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 218 DALGSLKDSLHQCYVSGIARVHALPHG*HHVSVEH 322
           DA+ SLK SLH   +     +H +P   H+ S+ H
Sbjct: 8   DAISSLKSSLHGLSICAFNHLHHVPQ--HNGSLAH 40


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 86  VDVHGLR*PLNTRWAVSSSTYL 21
           +DVH  R P N +W+ S + Y+
Sbjct: 74  IDVHNERDPANIKWSASGAEYV 95


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 574 IHEMFGKPQDVSKLLFYNSMTYEEMWLDCADKL-TAMIQNIIEFAKLIPGFMKLTQDD 404
           IHE   K Q V  L F N   YE+  +D  DK+ T  I+ ++E     P  + +T+ D
Sbjct: 698 IHETNLKKQGVLPLTFVNEADYEK--IDAEDKVSTRGIEQLLEGVLDQPITLVVTKKD 753


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 YEFRELNDVLDHRGELVGAVQPHLLVGHGVIEQELRNILGLAEHL 568
           YEF+   ++L    + V  V P +L+G+ +   ++  +L  A+ L
Sbjct: 353 YEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSL 397


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -2

Query: 367 AIVRLSRLIDVNRDQVLYGDVVLPVRECVHARDPRDVALVQGIFEAAKSIARLKLTETEL 188
           ++VRLSR +  ++  V    V   V+   +   PR+ +      E A+  + L +    +
Sbjct: 10  SVVRLSRTVPYSKTMVRSFHVSCAVKNSGNVPTPRNKSFFSRALEMAEVTSSLSMLGA-V 68

Query: 187 ALYQSL 170
           AL+QSL
Sbjct: 69  ALFQSL 74


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 406 DQILLLKSGSFELAIVRLSRLIDVNRDQVLYGDVVLPVRECVHARDPRDVALVQGIFEAA 227
           DQI LL S    L   ++  L+D + ++V    ++  ++  VH++     A  Q + +  
Sbjct: 136 DQISLLFSRYCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQTQFLHQTL 195

Query: 226 KSIARL 209
            SI  L
Sbjct: 196 GSILAL 201


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 466 IQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLI 341
           +Q+I  F ++ P F  +      L  K  ++EL I R +RL+
Sbjct: 28  VQDIQSFIRVFPSFQTILDSSNDLFWKKKNYELRI-RRNRLL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,183
Number of Sequences: 5004
Number of extensions: 57861
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)