Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_C08
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 204 5e-53
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 202 3e-52
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
06_03_0543 + 21967787-21970261 29 5.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 7.6
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 10.0
01_05_0415 - 21940466-21941536 28 10.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 204 bits (499), Expect = 5e-53
Identities = 93/158 (58%), Positives = 118/158 (74%)
Frame = -2
Query: 788 RAXVAIETPXXVFVISSRPFGQRAVXKFAAHTGXTXIAXRFTPGAFTNQIQAAFREPRLL 609
R VAIE P + V S+RP+GQRAV KFA +TG IA R TPG FTNQ+Q +F EPRLL
Sbjct: 67 RVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLL 126
Query: 608 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 429
I+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR V
Sbjct: 127 ILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMV 186
Query: 428 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 315
L++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 202 bits (492), Expect = 3e-52
Identities = 91/154 (59%), Positives = 115/154 (74%)
Frame = -2
Query: 788 RAXVAIETPXXVFVISSRPFGQRAVXKFAAHTGXTXIAXRFTPGAFTNQIQAAFREPRLL 609
R VAIE P + V S+RP+GQRAV KFA +TG IA R TPG FTNQ+Q +F EPRLL
Sbjct: 67 RVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLL 126
Query: 608 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 429
I+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR V
Sbjct: 127 ILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMV 186
Query: 428 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
L++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -2
Query: 728 GQRAVXKFAAHTGXTXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYV 555
G+ + HT T R TP AF + AA E R+ + + ++ EA Y
Sbjct: 260 GENSCWGVFRHTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYR 319
Query: 554 NIPVIALCNTDSPLR 510
+I V + + + P++
Sbjct: 320 HIEVFDMRSPEQPMQ 334
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_05_0415 - 21940466-21941536
Length = 356
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 804 TCXGXSGXXSHRDPRXCVCHFITALRSACCXEVCR 700
T G + S R+PR C F LR AC E CR
Sbjct: 8 TSSGAAKKPSPRNPRCAACKF---LRRACSPEECR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,492,277
Number of Sequences: 37544
Number of extensions: 417838
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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