Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B22
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.9  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 360 HNNIVKVFTSQQSVSVGGLHFEHSFLDLQHR 452
           H+NIVKV   +Q  S+  +  E     LQ+R
Sbjct: 116 HSNIVKVLMIEQGASLSLITMELCGTTLQNR 146


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 233 DINLPYLTMDASG---PKHMNLKMTRSKLE 153
           ++ LP  T   S    PKH+   +T+SK+E
Sbjct: 364 NVTLPTSTYSGSPTELPKHLPTSLTKSKME 393


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 413 TSLRTLLSGSPAPRYRRFHLRGHTPLL 493
           TSL  +    P P YR +   G  P+L
Sbjct: 255 TSLVCVAQACPTPEYRWYAQTGSEPML 281


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 413 TSLRTLLSGSPAPRYRRFHLRGHTPLL 493
           TSL  +    P P YR +   G  P+L
Sbjct: 255 TSLVCVAQACPTPEYRWYAQTGSEPML 281


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 608 QRQATKDAGQISGLNVLRVINEPTAAALAYG 516
           Q +A K A  +   N   +I+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 693 STQMHQSGSXSILCHQYLHPGVAI 764
           S Q HQ  +  I  HQ  H G+ I
Sbjct: 792 SQQRHQHAAQMIYGHQQSHHGLHI 815


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 358 FTITLSKSSPPSRVSPLV 411
           F +T+ +S PP+  +PL+
Sbjct: 258 FLMTIRESLPPTEKTPLI 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,909
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)