Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B20
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   7.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   7.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   7.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = -2

Query: 282 GCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKV 175
           GC++ C++ +   K  +T+  ++D S     ++ +V
Sbjct: 287 GCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQV 322


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 127 VLKLHVLPRIAVSLNGHFCFHFRVKFRFVLDNVIGGCLFSEL 252
           VL L   P   V L  H CF    +  FV++ V GG L  ++
Sbjct: 37  VLALSTKPPFLVQL--HSCFQTMDRLYFVMEYVNGGDLMYQI 76


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 187 HFRVKFRFVLDNVIGG 234
           ++R K + VLDN++GG
Sbjct: 27  NYREKEKEVLDNILGG 42


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 187 HFRVKFRFVLDNVIGG 234
           ++R K + VLDN++GG
Sbjct: 27  NYREKEKEVLDNILGG 42


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 615 RISCDCSDIF 644
           R+SCDC D F
Sbjct: 86  RLSCDCDDKF 95


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 615 RISCDCSDIF 644
           R+SCDC D F
Sbjct: 91  RLSCDCDDKF 100


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 615 RISCDCSDIF 644
           R+SCDC D F
Sbjct: 91  RLSCDCDDKF 100


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 305 AISSALPYNNFNTFSLTCNDLPKI 376
           ++S+   YNN N   L CN+  K+
Sbjct: 84  SLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 305 AISSALPYNNFNTFSLTCNDLPKI 376
           ++S+   YNN N   L CN+  K+
Sbjct: 84  SLSNNYNYNNNNYKKLYCNNYKKL 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,093
Number of Sequences: 438
Number of extensions: 3301
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)