Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B19
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.60 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   4.2  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   4.2  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   7.4  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   9.7  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 488 ECXGNXGAIXYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGCGPE 348
           +C G+     YGQ      C    S++S  AG N T+  A   C  +
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSKQ 348


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 138 VGKMCKVVVFFFFLFECSSRDVFILGVPSVHVSYGIGEAQR 260
           +GK C+VV FF  L E       ++ VPS  +   + E  R
Sbjct: 579 LGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELAR 619


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 443 LPESCCVKKSILSTFAGNNCTVDAANPGCGPEIGELYQKWNKPIAGVALGV--ACVEVVG 270
           L  +C    S L  FAG+      A     P+I +   +W  P+  VA+ V  AC+  + 
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399

Query: 269 A 267
           A
Sbjct: 400 A 400


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 153 YTFYQPVSRASPTCHERLLPRYYIKTWSTSIATRSVPGPQ 34
           Y  Y    +  P  + R L   Y K W+    TRS  GPQ
Sbjct: 21  YNIYNIARKQLPALNNRTL---YQKKWNAKKETRSYHGPQ 57


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 DRWDLRG*QVGKMCKVVVFFF 173
           D W+ RG  VG++CK  V  F
Sbjct: 534 DGWEKRGIDVGRLCKFPVLPF 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,380
Number of Sequences: 5004
Number of extensions: 46241
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)