Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B13
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   170   2e-43
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   170   2e-43
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   5.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  170 bits (414), Expect = 2e-43
 Identities = 95/184 (51%), Positives = 118/184 (64%)
 Frame = -2

Query: 659 KLMXCIGVTQGQRIPKVSILGWHTKEVTPVRHTRVLGKVACIXRLGIXLGCRSL*LVPGQ 480
           +++  IGVT+G+   + +   W TK +    H R L KVACI         +      G 
Sbjct: 213 EMIDVIGVTRGKG-NEGTTARWGTKRLPRKTH-RGLRKVACIGAWH-PANVQWTVARAGN 269

Query: 479 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 300
            GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 299 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGT 120
           M+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GT
Sbjct: 323 MLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGT 382

Query: 119 LKKD 108
           LKKD
Sbjct: 383 LKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  170 bits (414), Expect = 2e-43
 Identities = 95/184 (51%), Positives = 118/184 (64%)
 Frame = -2

Query: 659 KLMXCIGVTQGQRIPKVSILGWHTKEVTPVRHTRVLGKVACIXRLGIXLGCRSL*LVPGQ 480
           +++  IGVT+G+   + +   W TK +    H R L KVACI         +      G 
Sbjct: 213 EMIDVIGVTRGKG-NEGTTARWGTKRLPRKTH-RGLRKVACIGAWH-PANVQWTVARAGN 269

Query: 479 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 300
            GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 299 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGT 120
           M+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GT
Sbjct: 323 MLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGT 382

Query: 119 LKKD 108
           LKKD
Sbjct: 383 LKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 351 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF-LTRHELQ 500
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +    H++Q
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLYGSPSHKIQ 417


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 366 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 485
           ++ L RC++   F +LF  S S +  FL   S + I + +
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 642  WCHPGAKDTKGVNSWLAHQRSY 577
            WC  G  D    N+W ++Q+SY
Sbjct: 1236 WCSAGVTDMSECNTW-SYQKSY 1256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,620
Number of Sequences: 5004
Number of extensions: 66277
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)