Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B13
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   179   2e-45
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   172   3e-43
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   3.3  
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531...    28   7.6  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  179 bits (436), Expect = 2e-45
 Identities = 100/186 (53%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
 Frame = -2

Query: 665 KMKLMXCIGVTQGQRIPKVSILGWHTKEVTPVRHTRVLGKVACIXRLGIXLGCRSL*LVP 486
           K +++  IGVT+G+    V +  W    +    H R L KVACI   G     R    V 
Sbjct: 214 KDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTH-RGLRKVACI---GAWHPARVSYTVA 268

Query: 485 --GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 312
             GQ GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V 
Sbjct: 269 RAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVK 322

Query: 311 NDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAA 132
            D++MIKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  
Sbjct: 323 GDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQR 382

Query: 131 FMGTLK 114
           F G LK
Sbjct: 383 FFGKLK 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  172 bits (418), Expect = 3e-43
 Identities = 96/178 (53%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
 Frame = -2

Query: 665 KMKLMXCIGVTQGQRIPKVSILGWHTKEVTPVRHTRVLGKVACIXRLGIXLGCRSL*LVP 486
           K +++  IGVT+G+    V +  W    +    H R L KVACI   G     R    V 
Sbjct: 214 KDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTH-RGLRKVACI---GAWHPARVSYTVA 268

Query: 485 --GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 312
             GQ GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V 
Sbjct: 269 RAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVK 322

Query: 311 NDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 138
            D++MIKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 323 GDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 371  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>05_04_0375 +
           20750170-20751011,20751707-20751865,20752894-20753146,
           20753287-20753316
          Length = 427

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 687 VRLWXXPXDEIDGXHWCHPGAKD 619
           V  W  P   +D  HWC PG  D
Sbjct: 391 VGTWSYPPTVLDCSHWCLPGVPD 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,150,434
Number of Sequences: 37544
Number of extensions: 461153
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)