Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B11
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.12 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.38 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 735 PNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSM 640
           P D   C   FG  +H+ +E++  +DK+ + M
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
 Frame = -2

Query: 777 WTLPXQFLCS*TIG----PNDMXTCTFKFGFRMHNSDEMDFVI--DKRIYSM---FESGA 625
           W  P  +  S TI     P D  TC  KFG    N D++   +  +K    +   ++SG 
Sbjct: 141 WVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGT 200

Query: 624 WE 619
           W+
Sbjct: 201 WD 202


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -2

Query: 777 WTLPXQFLCS*TIG----PNDMXTCTFKFGFRMHNSDEMD 670
           WT P  F  S  I     P D  TC  KFG   ++  ++D
Sbjct: 135 WTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 744 TIGPNDMXTCT 712
           T GPN++ TCT
Sbjct: 418 TTGPNEIVTCT 428


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 744 TIGPNDMXTCT 712
           T GPN++ TCT
Sbjct: 404 TTGPNEIVTCT 414


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 744 TIGPNDMXTCT 712
           T GPN++ TCT
Sbjct: 438 TTGPNEIVTCT 448


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 744 TIGPNDMXTCT 712
           T GPN++ TCT
Sbjct: 387 TTGPNEIVTCT 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,396
Number of Sequences: 438
Number of extensions: 2486
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)