Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B09
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    30   0.44 
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   4.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   7.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   9.6  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   9.6  

>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 642 RREADWFLKADDDTYVVVENLRYMLADYSSNDPVYFG 532
           + + D+ +KADDD+++ +  L  ML ++      YFG
Sbjct: 201 KHDYDFIVKADDDSFLNLPRLFEMLKEHVGKSRFYFG 237


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -2

Query: 540 YFGCRFKPFTPQGYMSGGAGYVLSREALDQ---FVNKALPSPHLCKASD--HGAEDAEI 379
           +    F+ F   GY  G AG+V  R+ +D+   ++N       L K SD  H   D EI
Sbjct: 23  HMAAAFRMFGRNGYNEGTAGHVTVRDPIDENTFWINPLEVPFSLMKPSDLVHINSDGEI 81


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 362  LWRHLPISASSAPWSLALHRC 424
            L  HL ++ASS  WSL  H C
Sbjct: 1767 LSNHLCLTASSTEWSLIKHWC 1787


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 456 DQFVNKALPSPHLCKASDHGAEDAEIGK 373
           D +  K     H C + DH ++D  +GK
Sbjct: 58  DIYYEKGSTVDHYCHSYDHNSDDTPLGK 85


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 430 GQRLVHELVQRLPAEHVARAAAHVPLGRKRLEPASEVHRIVATV 561
           GQ     ++++  A+ + RAA  + +G K LEP S    + ATV
Sbjct: 69  GQTSSEPILRQCLAKGIGRAAL-INVGEKELEPLSVAKLLKATV 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,689
Number of Sequences: 5004
Number of extensions: 65151
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)