Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B09
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    31   0.010
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 181 VVERHGVVGTTIQALVAGVVDVAPVPEALVLVREQVVLRDEREE 312
           V  R  V G  +  L+AG++   P+   L    E VVL D +EE
Sbjct: 137 VTRRIAVAGIAVVWLLAGLISFVPISLGLHRANEPVVLDDSKEE 180


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 783 GXRXNKLLFMSSVEDSNLPSVKLPV 709
           G R     F+SS+++SN  S ++P+
Sbjct: 615 GMRYKMFFFLSSMDESNTKSYEIPL 639


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 783 GXRXNKLLFMSSVEDSNLPSVKLPV 709
           G R     F+SS+++SN  S ++P+
Sbjct: 615 GMRYKMFFFLSSMDESNTKSYEIPL 639


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 31  LRWGLTSY*SKYLLGIVPEYLGQLAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGT 210
           LR  + +Y  + L+  VP +    +    D V  K+ YE+ +       D++ + G +G+
Sbjct: 438 LREDVINYNCRSLVASVPFFANADSNFVSDVVT-KLRYEVFQPG-----DIIIKEGTIGS 491

Query: 211 TIQALVAGVVDV 246
            +  +  G+VD+
Sbjct: 492 KMYFIQEGIVDI 503


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 304 REEPAPPHRVAGVHRLHPDV-VETFADLRVLRAVVAGLAQMRG 429
           +EEP  P+R   V  +H D+ +     LR L++   G+ +  G
Sbjct: 114 KEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 304 REEPAPPHRVAGVHRLHPDV-VETFADLRVLRAVVAGLAQMRG 429
           +EEP  P+R   V  +H D+ +     LR L++   G+ +  G
Sbjct: 114 KEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 31  LRWGLTSY*SKYLLGIVPEYLGQLAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGT 210
           LR  + +Y  + L+  VP +    +    D V  K+ YE+ +       D++ + G +G+
Sbjct: 406 LREDVINYNCRSLVASVPFFANADSNFVSDVVT-KLRYEVFQPG-----DIIIKEGTIGS 459

Query: 211 TIQALVAGVVDV 246
            +  +  G+VD+
Sbjct: 460 KMYFIQEGIVDI 471


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 304 REEPAPPHRVAGVHRLHPDV-VETFADLRVLRAVVAGLAQMRG 429
           +EEP  P+R   V  +H D+ +     LR L++   G+ +  G
Sbjct: 114 KEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVG 156


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 433 QRLVHELVQRLPAEHVARAAAHVPLGRKRLEPASEVHRIVATVV 564
           +RL   L+ R+P + +   AAH   GR R    S+ +  VA  V
Sbjct: 342 RRLPKLLLMRVPDDLLNDLAAHKMHGRGRSGKKSKFNAAVAAAV 385


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 307  PVRPAGPPV 281
            P RPAGPP+
Sbjct: 1003 PQRPAGPPI 1011


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 196 GVVGTTIQALVAGVVDVAPV 255
           GVVG TI ++VAG   +  V
Sbjct: 14  GVVGGTIASVVAGAASLTLV 33


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 307  PVRPAGPPV 281
            P RPAGPP+
Sbjct: 999  PQRPAGPPI 1007


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,591
Number of Sequences: 438
Number of extensions: 4859
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)