Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_B07
(930 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.38
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.38
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.2
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +3
Query: 573 PXXLSXXPISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXR 752
P S P+ PP P P S PP PP P PPP R
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324
Query: 753 XSP 761
P
Sbjct: 325 FGP 327
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 594 PISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
P S PP P P P PP PP R S P PPP R P
Sbjct: 321 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP---RYPSAGPGMYPPPPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +3
Query: 573 PXXLSXXPISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXR 752
P S P+ PP P P S PP PP P PPP R
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334
Query: 753 XSP 761
P
Sbjct: 335 FGP 337
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 594 PISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
P S PP P P P PP PP R S P PPP R P
Sbjct: 331 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP---RYPSAGPGMYPPPPPSRPPAPP 385
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/66 (33%), Positives = 22/66 (33%)
Frame = -3
Query: 766 GXGDXRXXXGGGEXXGRXEVXRKAWGGXXGGXXXGXLXXXDGXXGRKXXGGGXXXEXGXX 587
G GD GGG G R WGG GG G G G GGG G
Sbjct: 64 GGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGGRGG---GGRGDWGGNNNGGGGNW-GGGG 119
Query: 586 EXXXGW 569
GW
Sbjct: 120 NNDGGW 125
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 570 HPXXLSXXPISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPP-PXX 746
HP + P PPP P P P PP F R PP P
Sbjct: 284 HPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM 343
Query: 747 XRXSPXP 767
R P P
Sbjct: 344 FRGGPYP 350
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +3
Query: 570 HPXXLSXXPISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPP-PXX 746
HP + P PPP P P P PP F R PP P
Sbjct: 284 HPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM 343
Query: 747 XRXSPXP 767
R P P
Sbjct: 344 FRGGPYP 350
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 600 SXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPP 740
S PPP P PS + P PP PP + + P PPP
Sbjct: 1334 SSPSPPPPPPPPPPPSDDLT-PVPPPPPPPPTMSKAPTGVPLPVPPP 1379
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 600 SXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
S PPP P P S P PP PP R P P R P P
Sbjct: 136 SSPPPPPPPRVPRTPPPR-SPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSP 190
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +3
Query: 612 PPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSP-PPXXXRXSPXPQQCDLRS 788
PPP P P P PP PP R SP PP R + ++ LR+
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSHDRRA-LRA 208
Query: 789 XXP 797
P
Sbjct: 209 RRP 211
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 594 PISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
P PPP P P S P PP P + SPPP P P
Sbjct: 276 PTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 594 PISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
P PPP P P S P PP P + SPPP P P
Sbjct: 297 PTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 594 PISXXXPPPXXFRPXXPSXXXSXPXXXPPXXPPHAFRXTSXRPXXSPPPXXXRXSPXP 767
P PPP P P S P PP P + SPPP P P
Sbjct: 282 PTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,713
Number of Sequences: 27780
Number of extensions: 92310
Number of successful extensions: 357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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