Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B06
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       29   2.6  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    28   6.0  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = +3

Query: 204 PKXXXGXPKPPPXXWGXGXPXF*KXXGKKXPPXNRGGXXPXTPPNXSAXPXXPXPP 371
           PK     P PPP       P   K  G   PP  +G   P  PP     P  P PP
Sbjct: 319 PKPAAAAPPPPPPPKAAPPPPPPK--GPPPPPPAKG--PPPPPPPKGPSPPPPPPP 370



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = +3

Query: 204 PKXXXGXPKPPPXXWGXGXPXF*KXXGKKXPPXNRGGXXPXTPPNXSAXPXXPXPP 371
           P      P PPP     G P      G   PP  +G   P  PP        P PP
Sbjct: 329 PPPPKAAPPPPPPK---GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +3

Query: 204 PKXXXGXPKPPPXXWGXGXPXF*KXXGKKXPPXNRGGXXPXTPPNXSAXPXXP 362
           P+     P PPP  WG   P      G+  PP  + G     P    A P  P
Sbjct: 41  PQMWGQAPPPPPQMWGQAPPPPQPAYGQ--PPPAQAGYYGAPPQAAPAVPAGP 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,805
Number of Sequences: 37544
Number of extensions: 181682
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)