Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_B04
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 130 1e-30
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 30 2.5
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 29 4.4
10_07_0196 + 13978647-13979142,13979242-13980542 29 4.4
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 29 5.8
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 28 7.6
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 28 7.6
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 130 bits (315), Expect = 1e-30
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 24/167 (14%)
Frame = -2
Query: 510 SGDTAQHAAAQLFAWEARAHGLDLHLLAEPTKLQMLQAHYKRDQQRYKSQVKQSILEKYG 331
SG + + AWEA G D+H+ A P++ ++L +K +++ KS+ K I+EKYG
Sbjct: 289 SGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSENKDKIMEKYG 348
Query: 330 GEEHLQSVPRELLLAQTEVFTRYNRDGTLVSGA------------------------EKQ 223
+ +PRELLL Q+E Y+R G ++ G +
Sbjct: 349 NAASEEPIPRELLLGQSEKEIEYDRTGRIIKGQLTSSISHQMTRSLSSWILKVHFIQDVA 408
Query: 222 LAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVGEAG 82
L KSKYEED INNHTTVWGS+W+D QWGYKCC I+ SYC G AG
Sbjct: 409 LPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGLAG 455
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Frame = -3
Query: 659 NLXIREDTAKYLRNXDPNSAXYDPKTRSMRDNPTPNVPESE--YGGEN 522
NL IREDTAKYL N D NSA YDPKTRSMR++P P+ ++ Y G+N
Sbjct: 237 NLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDN 284
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 393 YKRDQQRY-KSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLV 241
YK D +R K K+++ E+YGGEE L + A + FT+Y+ LV
Sbjct: 448 YKFDDERVTKEDTKKALEEQYGGEEELPQINPGFNNAPFK-FTKYSNAYMLV 498
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 393 YKRDQQRY-KSQVKQSILEKYGGEEHLQSV 307
YK D +R K K+++ E+YGGEE L +
Sbjct: 434 YKFDDERVTKEDTKKALEEQYGGEEELPQI 463
>10_07_0196 + 13978647-13979142,13979242-13980542
Length = 598
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 742 RRRKXRQICGXXDMPGTKVISKQRITVVTXVSG 644
RR K RQ+C P TK + RI+ VSG
Sbjct: 118 RRSKSRQLCSCCSEPFTKARNAHRISETASVSG 150
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 393 YKRDQQRY-KSQVKQSILEKYGGEEHL 316
YK D +R K +K+++ E+YGGEE L
Sbjct: 413 YKFDDERVTKEDMKRALEEQYGGEEEL 439
>06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 364 AGETIDSGKVWR*GAPPVRTQGAAAGPDRSVHPLQQ 257
+G + S K+WR +PPVRT+ G D+ +Q+
Sbjct: 1080 SGASFVSLKLWR-SSPPVRTEQQKGGVDKGTRYMQE 1114
>03_03_0105 + 14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Frame = -2
Query: 507 GDTAQHAAAQLFAWEARAHGLDLHLLA-----------EPTKLQMLQ-AHYKRDQQRYKS 364
GD AQ+ A+L A+ +G+D H L + + MLQ YKRD +
Sbjct: 976 GDPAQYLVAELLCRAAKKNGMDFHELLDIPQGDRRKYHDDVSVMMLQKGMYKRDTSLFLR 1035
Query: 363 QVKQSILEK 337
++K I+ +
Sbjct: 1036 ELKSLIMNE 1044
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,848,146
Number of Sequences: 37544
Number of extensions: 400266
Number of successful extensions: 1291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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