Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_B01
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...    86   4e-17
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           30   2.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 41/71 (57%), Positives = 44/71 (61%)
 Frame = -1

Query: 468 EARKAXITXCYFXAAINRVGXEEFPNEFXSXDGKPAHKDLGLFYGSSXLCGPDGVRCPGX 289
           EAR A I   YF  +INRVG E FPN F S DGKP H D G FYGSS    PD    P  
Sbjct: 298 EARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSL 357

Query: 288 SRTRDGLLIAD 256
           SR RDGL+I+D
Sbjct: 358 SRYRDGLMISD 368



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%)
 Frame = -2

Query: 323 YAAPTALGAPVCPAPETAC*SRTVXLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYK 144
           ++AP A   P             + LNL RQI+D+  + MT R D Y + LS+ L+ D+K
Sbjct: 346 FSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFK 405

Query: 143 PQVV 132
           PQV+
Sbjct: 406 PQVI 409


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 321 CGPDGVRCPGXSRTRDGLLIADRGXEPEQTDQRQTLLLHDPTPGHVREQSQQST 160
           C   G+  P    +      +D+  +P  + Q+ T   HD TPGHV ++    T
Sbjct: 344 CSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDT 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,206,906
Number of Sequences: 37544
Number of extensions: 233878
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)