Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_P24
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   193   3e-50
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   193   4e-50
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   5.3  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  193 bits (471), Expect = 3e-50
 Identities = 87/116 (75%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +1

Query: 49  FQHPVMG-MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 225
           F+ P  G +GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 226 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 393
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = +2

Query: 689 QKKAHIMEIQLNGGTIEDKVKWAR 760
           QKKAH+MEIQ+NGG++ DKV+WAR
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAR 196



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/36 (38%), Positives = 27/36 (75%)
 Frame = +1

Query: 598 KSIEKDFKKMIRYCSVVRVIAHTQMKLKTATKEGSH 705
           +SI ++ +++ +YCSVVRV+AHTQ++     ++ +H
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  193 bits (470), Expect = 4e-50
 Identities = 86/116 (74%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +1

Query: 49  FQHPVMG-MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 225
           F+ P  G +GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 226 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 393
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = +2

Query: 689 QKKAHIMEIQLNGGTIEDKVKWAR 760
           QKKAH+MEIQ+NGG++ DKV+WAR
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAR 196



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/36 (38%), Positives = 27/36 (75%)
 Frame = +1

Query: 598 KSIEKDFKKMIRYCSVVRVIAHTQMKLKTATKEGSH 705
           +SI ++ +++ +YCSVVRV+AHTQ++     ++ +H
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 496 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 359
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 37  RTENFQHP---VMGMGFYPKKRSRRHRGKVKAFPKDDPSKPV 153
           ++E  QHP   +  M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 465 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 340
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,117
Number of Sequences: 5004
Number of extensions: 68981
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)