Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_P19
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 228 9e-61
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 29 0.61
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 0.81
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.9
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 7.5
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 10.0
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 10.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 10.0
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 228 bits (557), Expect = 9e-61
Identities = 97/130 (74%), Positives = 119/130 (91%)
Frame = +3
Query: 327 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 506
NDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS+
Sbjct: 76 NDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSI 135
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDC 686
+P+RRGYWG +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DC
Sbjct: 136 MPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDC 195
Query: 687 YTSARGSTGT 716
YT +RGST T
Sbjct: 196 YTQSRGSTKT 205
Score = 75.4 bits (177), Expect = 9e-15
Identities = 30/45 (66%), Positives = 41/45 (91%)
Frame = +2
Query: 179 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFL 313
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE++I+D+FL
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL 72
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 29.5 bits (63), Expect = 0.61
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = +3
Query: 354 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 533
V QTR G+ +G+ NG G G ++ + A + + A +++ + R Y
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291
Query: 534 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 707
TV + K +V + L P G G+ P+ ++ + AG++D GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 652 RSFFRWLVYRTATPQLVVQL 711
RS F+WL+ TATP+L+V L
Sbjct: 69 RSVFQWLIALTATPRLLVLL 88
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 176 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 51
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 545 KATHRPLQGHRQVWFCNSPADSCPSWYWN 631
+A L G + C + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 506 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 372
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 182 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 304
+D+ EW P++ LV ++ E +++ K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 SPNSAVLFAKEKSTNSRAFTCFL-YQSKNSRSLISSSARPXNDEVLKIMPVQKQ 365
SPN +V+ + ++ + + C L Y+ + + + SA ++ L+ Q++
Sbjct: 35 SPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEE 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,402
Number of Sequences: 5004
Number of extensions: 69238
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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