Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_P17
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 68 2e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 3e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 2e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 4e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 5e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 46 5e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 2e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 43 5e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 42 9e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 42 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 4e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 5e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 6e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 39 8e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 38 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 36 0.008
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 35 0.018
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.023
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 32 0.094
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 31 0.17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 29 0.88
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 3.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.6
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 27 4.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 6.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 26 6.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 8.2
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 68.1 bits (159), Expect = 2e-12
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TDVAARGLD+P VDLV+QY AP S DY+HR+ +MFLLP E +++ LK
Sbjct: 503 TDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLK 562
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV-XXXXXXXXXXXXVMFLLPNEXDFVRYL 744
T+VAARGLD+P VD ++QY P DY+HRV +MFL P+E F+RYL
Sbjct: 393 TNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYL 452
Query: 745 K 747
K
Sbjct: 453 K 453
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TD+ ARGLD P VD V+Q AP Y+HRV ++ LLP+E F++ L+
Sbjct: 342 TDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLE 401
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNE 723
TDVAARGLD+P+V LV+ P + DYVHR+ + F P +
Sbjct: 473 TDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +1
Query: 547 SGTR--LNKTDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
SG R L TDVAARGLD+P VD+V+ Y P + Y+HRV
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRV 373
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.4 bits (105), Expect = 5e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TDV ARG+D P + V+Q P++ DY+HR+ + LL E F+ +K
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIK 409
Query: 748 QXXL 759
L
Sbjct: 410 HLPL 413
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.4 bits (105), Expect = 5e-06
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXD 729
TD+A RG+D+P V LVL Y S DY HR+ + FL P + D
Sbjct: 573 TDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTD 626
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TDVA+RGLD+P V LV+ + P DY+HRV + + + D V ++
Sbjct: 315 TDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIE 374
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TD+ ARG+DV +V LV+ Y PA+ +Y+HR+ + F+ ++ +R ++
Sbjct: 315 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIE 374
Query: 748 Q 750
Q
Sbjct: 375 Q 375
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 42.3 bits (95), Expect = 9e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYLK 747
TD+ ARG+DV +V LV+ Y PA+ +Y+HR+ + F+ + +R ++
Sbjct: 317 TDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIE 376
Query: 748 Q 750
Q
Sbjct: 377 Q 377
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDF 732
T V ARGLDV + LV+ Y P DYVHRV V F+ P + +
Sbjct: 725 TSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKY 779
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHR 660
TDVAARG+D+P V V+ Y P +A YVHR
Sbjct: 446 TDVAARGIDIPSVTHVIHYHVPHTADMYVHR 476
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
T VA+RGLD+P V V+ Y P DYVHR+
Sbjct: 487 TAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.9 bits (89), Expect = 5e-04
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
TDVA+RG+D+ +++V+ Y APA+ Y+HRV
Sbjct: 561 TDVASRGIDIKGIEVVINYEAPATHEVYLHRV 592
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 553 TRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHR 660
T L TD+A+RGLD+P VD VLQ P + HR
Sbjct: 311 TVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHR 346
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 8e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
TDV RG+D+ RV++V+ Y P S Y+HRV
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRV 383
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
TDVA+RG+DV + V Y P + DYVHR+
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRI 457
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLPNEXDFVRYL 744
TD+ ARG+D V +V+ + P S Y+HR+ V F + ++++ +
Sbjct: 345 TDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLI 403
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
TDVA+RG+D+P + V+ Y P +VHRV
Sbjct: 403 TDVASRGIDIPLLANVINYDFPPQPKVFVHRV 434
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.023
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
+D+ ARG+DV V+ Y P S YVHR+
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRI 525
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.3 bits (70), Expect = 0.094
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
+D+ RG+D+ V++V+ + P +A Y+HR+
Sbjct: 338 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRI 369
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 580 ARGLDVPRVDLVLQYCAPASATDYVHRVXXXXXXXXXXXXVMFLLP 717
ARGLD V VL + P++ Y+HR+ + F++P
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.88
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAP---ASATD---YVHRV 663
T+V ARG+DV +V+LV+ Y P A D Y+HR+
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRI 446
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 119 CKRLCPRSYCGVLC 78
C R CP S CG+LC
Sbjct: 3 CNRTCPSSDCGILC 16
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 361 PPVNSMQVHVAVYSASSSWRVRAPPGTDRPRGTSTTSRSCSAAG--SV*CLDGSSTCGWP 534
PP +S A S S+ A G+ TSTT+ S + G + GS+T P
Sbjct: 186 PPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATTSAPGSNTTVTP 245
Query: 535 AVDLSGTRLNKTDVAARG 588
+ ++GT +K + G
Sbjct: 246 SSSITGTNDSKPAASNTG 263
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYV 654
T VA G+DVP +LV+++ + T YV
Sbjct: 430 TAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 275 KHGYNRFIRLQNVVSY 228
KHGYN ++RL+ + Y
Sbjct: 483 KHGYNEYMRLKQITQY 498
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 83 KPHNNS*DITFYSAKVYATRAPCYEYVI*QRSVVMRMVLCVQCSDVNNDMKQ 238
K NN D T A ++AT Y S ++R VL + SDVN+D+++
Sbjct: 551 KELNNDLDPTLRYAGMFAT---ALAYCGTSNSKIVRDVLHISVSDVNDDVRR 599
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRV 663
T + GLD+ VD+++ Y A AS + R+
Sbjct: 499 TSIGEEGLDIGEVDMIICYDASASPIRMLQRM 530
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 238 LFHIIIHVRTLNAKHHSHYYTALLNHIFV 152
LF +I+H TLN + HY +L+H F+
Sbjct: 798 LFGVIVHSGTLN---YGHYVAYVLSHKFL 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,980
Number of Sequences: 5004
Number of extensions: 70029
Number of successful extensions: 204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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