Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_P14
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.9  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 743 FMKILYTGASDSNCLCIXNSQSQGSFQA 826
           F+K + TG S ++C  +  +   G F+A
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEA 52


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 743 FMKILYTGASDSNCLCIXNSQSQGSFQA 826
           F+K + TG S ++C  +  +   G F+A
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEFEA 68


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 743 FMKILYTGASDSNCLCIXNSQSQGSFQA 826
           F+K + TG S ++C  +  +   G F+A
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEFEA 125


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 743 FMKILYTGASDSNCLCIXNSQSQGSFQA 826
           F+K + TG S ++C  +  +   G F+A
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGIGEFEA 125


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 545 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLERP 438
           D Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,994
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)