Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_P11
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.23 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.8  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    27   3.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   5.0  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    27   5.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   5.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 VRVHRANTGRSSNELDRQTTELERRGSGL-QHLAG 343
           +R H+ + GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 68
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/62 (33%), Positives = 23/62 (37%)
 Frame = -2

Query: 575 EIHFVTSVHPRTELERASLHVVGPIV*LHRNWSANVQALYPGDGAVIRYTGAESVVPGGG 396
           E H   SV   T      LH+ G        W A + A    DGAV  Y      V GGG
Sbjct: 108 EPHTADSVILATGASARRLHITGE----DTYWQAGISACAVCDGAVPIYRNKPLAVVGGG 163

Query: 395 CS 390
            S
Sbjct: 164 DS 165


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 420 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHT 557
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 426 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHTSDEMDFVIDK 587
           R S N S S +KR  +S+ +S +     +D  +   K  ++ HTS  +   I K
Sbjct: 31  RSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILK 84


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 504 WPNDMQTCTFKFGSRMHTSDEMDFVIDKRIYSMFES 611
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,500
Number of Sequences: 5004
Number of extensions: 59190
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)